Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_654 and HP15_655 are separated by 90 nucleotides HP15_655 and HP15_656 are separated by 28 nucleotides HP15_656 and HP15_657 are separated by 9 nucleotides
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463
_655
HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773
_656
HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219
_657
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 676.061 kb on - strand, within HP15_654 at 676.063 kb on + strand, within HP15_654 at 676.069 kb on - strand, within HP15_654 at 676.071 kb on - strand, within HP15_654 at 676.130 kb on + strand, within HP15_654 at 676.160 kb on + strand, within HP15_654 at 676.173 kb on - strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.224 kb on - strand, within HP15_654 at 676.308 kb on - strand, within HP15_654 at 676.379 kb on + strand, within HP15_654 at 676.452 kb on - strand, within HP15_654 at 676.455 kb on + strand, within HP15_654 at 676.520 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.544 kb on - strand, within HP15_654 at 676.564 kb on - strand, within HP15_654 at 676.654 kb on + strand, within HP15_654 at 676.662 kb on - strand, within HP15_654 at 676.881 kb on + strand at 676.881 kb on + strand at 676.889 kb on - strand at 676.889 kb on - strand at 676.935 kb on - strand at 677.150 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.326 kb on - strand, within HP15_655 at 677.405 kb on - strand, within HP15_655 at 677.434 kb on - strand at 677.439 kb on - strand at 677.498 kb on - strand at 677.545 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.733 kb on + strand, within HP15_656 at 677.736 kb on - strand, within HP15_656 at 677.793 kb on + strand at 677.793 kb on + strand at 677.865 kb on - strand at 678.000 kb on + strand, within HP15_657 at 678.040 kb on - strand, within HP15_657 at 678.052 kb on - strand, within HP15_657 at 678.092 kb on + strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.146 kb on - strand, within HP15_657 at 678.201 kb on + strand, within HP15_657 at 678.273 kb on - strand, within HP15_657 at 678.319 kb on - strand, within HP15_657 at 678.333 kb on - strand, within HP15_657 at 678.409 kb on + strand, within HP15_657 at 678.409 kb on - strand, within HP15_657
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 676,061 - HP15_654 0.44 +0.3 676,063 + HP15_654 0.44 +0.0 676,069 - HP15_654 0.45 +0.2 676,071 - HP15_654 0.45 -0.1 676,130 + HP15_654 0.49 +1.0 676,160 + HP15_654 0.51 +0.7 676,173 - HP15_654 0.52 +0.3 676,221 + HP15_654 0.55 +1.1 676,221 + HP15_654 0.55 +0.4 676,224 - HP15_654 0.55 +0.1 676,308 - HP15_654 0.60 +0.1 676,379 + HP15_654 0.65 +0.4 676,452 - HP15_654 0.70 -0.4 676,455 + HP15_654 0.70 +1.5 676,520 - HP15_654 0.74 +1.9 676,539 - HP15_654 0.76 +1.2 676,539 - HP15_654 0.76 +0.6 676,544 - HP15_654 0.76 -0.2 676,564 - HP15_654 0.77 +0.5 676,654 + HP15_654 0.83 +1.4 676,662 - HP15_654 0.84 +2.4 676,881 + +0.9 676,881 + -0.6 676,889 - +0.4 676,889 - +0.2 676,935 - +0.5 677,150 - HP15_655 0.32 +0.7 677,249 - HP15_655 0.54 +3.0 677,249 - HP15_655 0.54 -0.8 677,326 - HP15_655 0.70 +1.1 677,405 - HP15_655 0.87 +0.5 677,434 - -0.4 677,439 - +0.8 677,498 - -0.6 677,545 - HP15_656 0.19 +0.5 677,582 - HP15_656 0.32 -0.8 677,582 - HP15_656 0.32 -0.1 677,733 + HP15_656 0.85 +0.8 677,736 - HP15_656 0.87 -2.2 677,793 + +0.5 677,793 + +0.4 677,865 - +0.8 678,000 + HP15_657 0.15 +0.2 678,040 - HP15_657 0.18 +0.1 678,052 - HP15_657 0.19 +0.7 678,092 + HP15_657 0.22 -0.2 678,130 - HP15_657 0.24 +0.8 678,130 - HP15_657 0.24 -0.1 678,146 - HP15_657 0.25 +0.3 678,201 + HP15_657 0.29 +1.0 678,273 - HP15_657 0.34 +0.6 678,319 - HP15_657 0.37 +0.5 678,333 - HP15_657 0.38 +1.0 678,409 + HP15_657 0.44 +0.5 678,409 - HP15_657 0.44 +0.8
Or see this region's nucleotide sequence