Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2888 and HP15_2889 overlap by 4 nucleotides HP15_2889 and HP15_2890 are separated by 6 nucleotides HP15_2890 and HP15_2891 are separated by 127 nucleotides HP15_2891 and HP15_2892 are separated by 35 nucleotides
HP15_2888: HP15_2888 - protein containing DUF162, at 3,024,701 to 3,025,354
_2888
HP15_2889: HP15_2889 - membrane protein containing DUF6, transmembrane, at 3,025,351 to 3,026,304
_2889
HP15_2890: HP15_2890 - lactoylglutathione lyase, at 3,026,311 to 3,026,859
_2890
HP15_2891: HP15_2891 - hypothetical protein, at 3,026,987 to 3,027,118
_2891
HP15_2892: HP15_2892 - alkane 1-monooxygenase, at 3,027,154 to 3,028,239
_2892
Position (kb)
3026
3027 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3025.389 kb on + strand at 3025.396 kb on - strand at 3025.397 kb on - strand at 3025.433 kb on + strand at 3025.456 kb on - strand, within HP15_2889 at 3025.607 kb on + strand, within HP15_2889 at 3025.617 kb on + strand, within HP15_2889 at 3025.625 kb on - strand, within HP15_2889 at 3026.004 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.157 kb on + strand, within HP15_2889 at 3026.175 kb on - strand, within HP15_2889 at 3026.234 kb on - strand at 3026.307 kb on - strand at 3026.318 kb on + strand at 3026.473 kb on + strand, within HP15_2890 at 3026.473 kb on + strand, within HP15_2890 at 3026.486 kb on + strand, within HP15_2890 at 3026.511 kb on - strand, within HP15_2890 at 3026.599 kb on + strand, within HP15_2890 at 3026.599 kb on + strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.743 kb on + strand, within HP15_2890 at 3026.886 kb on + strand at 3026.893 kb on + strand at 3026.893 kb on + strand at 3026.893 kb on + strand at 3026.977 kb on - strand at 3027.135 kb on + strand at 3027.135 kb on + strand at 3027.166 kb on + strand at 3027.276 kb on + strand, within HP15_2892 at 3027.284 kb on + strand, within HP15_2892 at 3027.330 kb on - strand, within HP15_2892 at 3027.396 kb on + strand, within HP15_2892 at 3027.404 kb on - strand, within HP15_2892 at 3027.455 kb on - strand, within HP15_2892 at 3027.492 kb on - strand, within HP15_2892 at 3027.621 kb on - strand, within HP15_2892 at 3027.694 kb on + strand, within HP15_2892 at 3027.738 kb on + strand, within HP15_2892 at 3027.748 kb on - strand, within HP15_2892 at 3027.771 kb on - strand, within HP15_2892
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 3,025,389 + -0.1 3,025,396 - -0.2 3,025,397 - +0.6 3,025,433 + -0.2 3,025,456 - HP15_2889 0.11 +0.2 3,025,607 + HP15_2889 0.27 -0.2 3,025,617 + HP15_2889 0.28 +0.6 3,025,625 - HP15_2889 0.29 +0.7 3,026,004 + HP15_2889 0.68 -0.2 3,026,127 + HP15_2889 0.81 +0.5 3,026,127 + HP15_2889 0.81 +0.2 3,026,157 + HP15_2889 0.84 +0.3 3,026,175 - HP15_2889 0.86 -0.6 3,026,234 - +0.5 3,026,307 - -1.8 3,026,318 + -2.8 3,026,473 + HP15_2890 0.30 -2.5 3,026,473 + HP15_2890 0.30 -1.7 3,026,486 + HP15_2890 0.32 -4.4 3,026,511 - HP15_2890 0.36 -4.5 3,026,599 + HP15_2890 0.52 -5.3 3,026,599 + HP15_2890 0.52 -3.3 3,026,607 - HP15_2890 0.54 -5.1 3,026,607 - HP15_2890 0.54 -5.1 3,026,607 - HP15_2890 0.54 -3.1 3,026,607 - HP15_2890 0.54 -3.8 3,026,743 + HP15_2890 0.79 -5.6 3,026,886 + -2.5 3,026,893 + -0.6 3,026,893 + -1.2 3,026,893 + -0.9 3,026,977 - +0.4 3,027,135 + +0.1 3,027,135 + +0.5 3,027,166 + -0.1 3,027,276 + HP15_2892 0.11 -0.8 3,027,284 + HP15_2892 0.12 +0.9 3,027,330 - HP15_2892 0.16 +0.2 3,027,396 + HP15_2892 0.22 -0.0 3,027,404 - HP15_2892 0.23 +0.3 3,027,455 - HP15_2892 0.28 -0.6 3,027,492 - HP15_2892 0.31 +0.1 3,027,621 - HP15_2892 0.43 -0.6 3,027,694 + HP15_2892 0.50 -0.1 3,027,738 + HP15_2892 0.54 +0.2 3,027,748 - HP15_2892 0.55 +0.9 3,027,771 - HP15_2892 0.57 +0.7
Or see this region's nucleotide sequence