Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2473 and HP15_2474 are separated by 40 nucleotides HP15_2474 and HP15_2475 overlap by 4 nucleotides HP15_2475 and HP15_2476 are separated by 102 nucleotides HP15_2476 and HP15_2477 are separated by 244 nucleotides
HP15_2473: HP15_2473 - leucyl-tRNA synthetase, at 2,612,531 to 2,615,116
_2473
HP15_2474: HP15_2474 - rare lipoprotein B, at 2,615,157 to 2,615,705
_2474
HP15_2475: HP15_2475 - DNA polymerase III, delta subunit, at 2,615,702 to 2,616,709
_2475
HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084
_2476
HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907
_2477
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-1
0
1 at 2616.739 kb on + strand at 2616.756 kb on - strand at 2616.847 kb on - strand, within HP15_2476 at 2616.904 kb on - strand, within HP15_2476 at 2617.031 kb on - strand, within HP15_2476 at 2617.087 kb on + strand at 2617.095 kb on - strand at 2617.299 kb on + strand at 2617.307 kb on - strand at 2617.326 kb on - strand at 2617.382 kb on + strand at 2617.390 kb on - strand, within HP15_2477 at 2617.424 kb on + strand, within HP15_2477 at 2617.500 kb on + strand, within HP15_2477 at 2617.525 kb on + strand, within HP15_2477 at 2617.578 kb on + strand, within HP15_2477
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 2,616,739 + -0.7 2,616,756 - +0.7 2,616,847 - HP15_2476 0.13 +0.0 2,616,904 - HP15_2476 0.34 -1.2 2,617,031 - HP15_2476 0.80 -0.7 2,617,087 + -0.2 2,617,095 - -0.5 2,617,299 + +0.1 2,617,307 - +0.4 2,617,326 - +1.4 2,617,382 + -0.5 2,617,390 - HP15_2477 0.11 +0.0 2,617,424 + HP15_2477 0.16 -1.6 2,617,500 + HP15_2477 0.30 +0.3 2,617,525 + HP15_2477 0.34 +0.1 2,617,578 + HP15_2477 0.43 -0.0
Or see this region's nucleotide sequence