Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2172 and HP15_2173 are separated by 21 nucleotides HP15_2173 and HP15_2174 overlap by 4 nucleotides HP15_2174 and HP15_2175 are separated by 157 nucleotides
HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063
_2172
HP15_2173: HP15_2173 - glucokinase, at 2,283,085 to 2,284,050
_2173
HP15_2174: HP15_2174 - 6-phosphogluconate dehydratase, at 2,284,047 to 2,285,879
_2174
HP15_2175: HP15_2175 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,286,037 to 2,287,041
_2175
Position (kb)
2284
2285
2286 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2283.057 kb on + strand at 2283.108 kb on - strand at 2283.249 kb on + strand, within HP15_2173 at 2283.297 kb on - strand, within HP15_2173 at 2283.367 kb on + strand, within HP15_2173 at 2283.422 kb on + strand, within HP15_2173 at 2283.422 kb on + strand, within HP15_2173 at 2283.460 kb on + strand, within HP15_2173 at 2283.468 kb on - strand, within HP15_2173 at 2283.575 kb on + strand, within HP15_2173 at 2283.593 kb on - strand, within HP15_2173 at 2283.649 kb on - strand, within HP15_2173 at 2283.742 kb on + strand, within HP15_2173 at 2283.922 kb on - strand, within HP15_2173 at 2284.014 kb on - strand at 2284.036 kb on + strand at 2284.256 kb on - strand, within HP15_2174 at 2284.402 kb on - strand, within HP15_2174 at 2284.402 kb on - strand, within HP15_2174 at 2284.402 kb on - strand, within HP15_2174 at 2284.407 kb on - strand, within HP15_2174 at 2284.409 kb on + strand, within HP15_2174 at 2284.420 kb on + strand, within HP15_2174 at 2284.655 kb on - strand, within HP15_2174 at 2284.723 kb on + strand, within HP15_2174 at 2284.730 kb on + strand, within HP15_2174 at 2284.736 kb on - strand, within HP15_2174 at 2284.935 kb on + strand, within HP15_2174 at 2285.034 kb on - strand, within HP15_2174 at 2285.039 kb on - strand, within HP15_2174 at 2285.056 kb on + strand, within HP15_2174 at 2285.109 kb on + strand, within HP15_2174 at 2285.275 kb on + strand, within HP15_2174 at 2285.324 kb on + strand, within HP15_2174 at 2285.436 kb on - strand, within HP15_2174 at 2285.522 kb on - strand, within HP15_2174 at 2285.643 kb on + strand, within HP15_2174 at 2285.740 kb on + strand at 2285.753 kb on - strand at 2285.762 kb on - strand at 2286.122 kb on + strand at 2286.147 kb on + strand, within HP15_2175 at 2286.183 kb on + strand, within HP15_2175 at 2286.330 kb on - strand, within HP15_2175 at 2286.362 kb on - strand, within HP15_2175 at 2286.372 kb on + strand, within HP15_2175 at 2286.402 kb on - strand, within HP15_2175 at 2286.402 kb on - strand, within HP15_2175 at 2286.409 kb on - strand, within HP15_2175 at 2286.421 kb on - strand, within HP15_2175 at 2286.529 kb on + strand, within HP15_2175 at 2286.529 kb on + strand, within HP15_2175 at 2286.574 kb on + strand, within HP15_2175 at 2286.610 kb on + strand, within HP15_2175 at 2286.612 kb on + strand, within HP15_2175 at 2286.625 kb on - strand, within HP15_2175
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 2,283,057 + -0.3 2,283,108 - -0.1 2,283,249 + HP15_2173 0.17 +0.1 2,283,297 - HP15_2173 0.22 +0.6 2,283,367 + HP15_2173 0.29 +0.2 2,283,422 + HP15_2173 0.35 +0.3 2,283,422 + HP15_2173 0.35 +1.0 2,283,460 + HP15_2173 0.39 -0.1 2,283,468 - HP15_2173 0.40 -1.2 2,283,575 + HP15_2173 0.51 +0.6 2,283,593 - HP15_2173 0.53 -0.0 2,283,649 - HP15_2173 0.58 -0.2 2,283,742 + HP15_2173 0.68 -1.6 2,283,922 - HP15_2173 0.87 +0.0 2,284,014 - +0.1 2,284,036 + -0.7 2,284,256 - HP15_2174 0.11 -3.0 2,284,402 - HP15_2174 0.19 -3.4 2,284,402 - HP15_2174 0.19 -2.7 2,284,402 - HP15_2174 0.19 -1.5 2,284,407 - HP15_2174 0.20 -2.5 2,284,409 + HP15_2174 0.20 -1.8 2,284,420 + HP15_2174 0.20 -2.2 2,284,655 - HP15_2174 0.33 -2.9 2,284,723 + HP15_2174 0.37 -1.6 2,284,730 + HP15_2174 0.37 -3.9 2,284,736 - HP15_2174 0.38 -1.7 2,284,935 + HP15_2174 0.48 -2.5 2,285,034 - HP15_2174 0.54 -2.7 2,285,039 - HP15_2174 0.54 -1.4 2,285,056 + HP15_2174 0.55 -3.6 2,285,109 + HP15_2174 0.58 -1.7 2,285,275 + HP15_2174 0.67 -3.2 2,285,324 + HP15_2174 0.70 -1.7 2,285,436 - HP15_2174 0.76 -2.7 2,285,522 - HP15_2174 0.80 -1.6 2,285,643 + HP15_2174 0.87 -2.2 2,285,740 + -3.0 2,285,753 - -3.0 2,285,762 - -2.9 2,286,122 + +0.8 2,286,147 + HP15_2175 0.11 -0.6 2,286,183 + HP15_2175 0.15 -0.0 2,286,330 - HP15_2175 0.29 -0.3 2,286,362 - HP15_2175 0.32 +0.2 2,286,372 + HP15_2175 0.33 -0.1 2,286,402 - HP15_2175 0.36 +0.2 2,286,402 - HP15_2175 0.36 +0.8 2,286,409 - HP15_2175 0.37 +1.0 2,286,421 - HP15_2175 0.38 -0.5 2,286,529 + HP15_2175 0.49 +0.1 2,286,529 + HP15_2175 0.49 +0.1 2,286,574 + HP15_2175 0.53 -0.4 2,286,610 + HP15_2175 0.57 +0.2 2,286,612 + HP15_2175 0.57 +0.6 2,286,625 - HP15_2175 0.59 +0.5
Or see this region's nucleotide sequence