Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2278

Experiment: MoYLS4 with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2276 and DVU2277 overlap by 20 nucleotidesDVU2277 and DVU2278 are separated by 63 nucleotidesDVU2278 and DVU2279 are separated by 144 nucleotidesDVU2279 and DVU2280 are separated by 179 nucleotides DVU2276: DVU2276 - membrane protein, putative (TIGR), at 2,365,527 to 2,366,273 DVU2276 DVU2277: DVU2277 - hypothetical protein (TIGR), at 2,366,254 to 2,366,865 DVU2277 DVU2278: DVU2278 - membrane protein, putative (TIGR), at 2,366,929 to 2,367,780 DVU2278 DVU2279: DVU2279 - hypothetical protein (TIGR), at 2,367,925 to 2,368,089 DVU2279 DVU2280: DVU2280 - amino acid permease family protein (TIGR), at 2,368,269 to 2,369,777 DVU2280 Position (kb) 2366 2367 2368Strain fitness (log2 ratio) -2 -1 0 1at 2365.965 kb on + strand, within DVU2276at 2365.970 kb on + strand, within DVU2276at 2365.973 kb on - strand, within DVU2276at 2365.973 kb on - strand, within DVU2276at 2365.978 kb on - strand, within DVU2276at 2366.044 kb on - strand, within DVU2276at 2366.205 kb on + strandat 2366.206 kb on - strandat 2366.321 kb on + strand, within DVU2277at 2366.467 kb on - strand, within DVU2277at 2366.503 kb on + strand, within DVU2277at 2366.552 kb on - strand, within DVU2277at 2366.602 kb on - strand, within DVU2277at 2366.618 kb on + strand, within DVU2277at 2366.712 kb on + strand, within DVU2277at 2366.718 kb on - strand, within DVU2277at 2366.720 kb on - strand, within DVU2277at 2366.750 kb on + strand, within DVU2277at 2366.761 kb on + strand, within DVU2277at 2366.833 kb on - strandat 2366.877 kb on + strandat 2366.981 kb on + strandat 2367.064 kb on - strand, within DVU2278at 2367.075 kb on - strand, within DVU2278at 2367.118 kb on + strand, within DVU2278at 2367.118 kb on + strand, within DVU2278at 2367.126 kb on - strand, within DVU2278at 2367.126 kb on - strand, within DVU2278at 2367.160 kb on - strand, within DVU2278at 2367.170 kb on - strand, within DVU2278at 2367.235 kb on - strand, within DVU2278at 2367.260 kb on - strand, within DVU2278at 2367.280 kb on - strand, within DVU2278at 2367.310 kb on - strand, within DVU2278at 2367.310 kb on - strand, within DVU2278at 2367.460 kb on + strand, within DVU2278at 2367.582 kb on + strand, within DVU2278at 2367.674 kb on + strand, within DVU2278at 2367.764 kb on - strandat 2367.800 kb on + strandat 2367.826 kb on - strandat 2367.833 kb on - strandat 2367.853 kb on + strandat 2367.887 kb on - strandat 2368.128 kb on - strandat 2368.138 kb on - strandat 2368.163 kb on - strandat 2368.221 kb on - strandat 2368.326 kb on + strandat 2368.434 kb on - strand, within DVU2280at 2368.442 kb on - strand, within DVU2280at 2368.442 kb on - strand, within DVU2280at 2368.642 kb on + strand, within DVU2280at 2368.652 kb on + strand, within DVU2280at 2368.694 kb on - strand, within DVU2280at 2368.743 kb on + strand, within DVU2280at 2368.763 kb on + strand, within DVU2280

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM
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2,365,965 + DVU2276 0.59 -0.1
2,365,970 + DVU2276 0.59 +0.0
2,365,973 - DVU2276 0.60 -0.1
2,365,973 - DVU2276 0.60 +0.2
2,365,978 - DVU2276 0.60 -0.0
2,366,044 - DVU2276 0.69 -0.3
2,366,205 + -0.4
2,366,206 - -0.5
2,366,321 + DVU2277 0.11 -1.7
2,366,467 - DVU2277 0.35 +0.1
2,366,503 + DVU2277 0.41 -0.1
2,366,552 - DVU2277 0.49 +0.5
2,366,602 - DVU2277 0.57 -0.7
2,366,618 + DVU2277 0.59 -0.4
2,366,712 + DVU2277 0.75 -0.3
2,366,718 - DVU2277 0.76 -0.3
2,366,720 - DVU2277 0.76 -0.3
2,366,750 + DVU2277 0.81 -0.1
2,366,761 + DVU2277 0.83 -0.3
2,366,833 - -0.1
2,366,877 + -0.2
2,366,981 + -0.4
2,367,064 - DVU2278 0.16 -0.2
2,367,075 - DVU2278 0.17 -0.9
2,367,118 + DVU2278 0.22 -1.2
2,367,118 + DVU2278 0.22 -0.6
2,367,126 - DVU2278 0.23 -0.4
2,367,126 - DVU2278 0.23 +0.9
2,367,160 - DVU2278 0.27 -1.6
2,367,170 - DVU2278 0.28 -0.9
2,367,235 - DVU2278 0.36 +0.0
2,367,260 - DVU2278 0.39 -0.2
2,367,280 - DVU2278 0.41 -1.6
2,367,310 - DVU2278 0.45 -0.6
2,367,310 - DVU2278 0.45 -0.6
2,367,460 + DVU2278 0.62 -2.7
2,367,582 + DVU2278 0.77 +0.2
2,367,674 + DVU2278 0.87 -0.1
2,367,764 - +0.4
2,367,800 + -0.2
2,367,826 - -0.3
2,367,833 - -0.2
2,367,853 + -0.1
2,367,887 - -0.6
2,368,128 - -0.7
2,368,138 - -0.3
2,368,163 - -0.1
2,368,221 - -0.5
2,368,326 + +0.8
2,368,434 - DVU2280 0.11 -0.7
2,368,442 - DVU2280 0.11 -0.4
2,368,442 - DVU2280 0.11 -0.3
2,368,642 + DVU2280 0.25 +0.6
2,368,652 + DVU2280 0.25 +0.3
2,368,694 - DVU2280 0.28 -0.1
2,368,743 + DVU2280 0.31 -0.4
2,368,763 + DVU2280 0.33 -0.2

Or see this region's nucleotide sequence