Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5132 and Pf6N2E2_5133 are separated by 69 nucleotides Pf6N2E2_5133 and Pf6N2E2_5134 are separated by 52 nucleotides Pf6N2E2_5134 and Pf6N2E2_5135 are separated by 83 nucleotides Pf6N2E2_5135 and Pf6N2E2_5136 are separated by 230 nucleotides
Pf6N2E2_5132 - NADH dehydrogenase (EC 1.6.99.3), at 5,918,438 to 5,919,736
_5132
Pf6N2E2_5133 - FIG00953980: hypothetical protein, at 5,919,806 to 5,919,979
_5133
Pf6N2E2_5134 - FIG060329: MOSC domain protein, at 5,920,032 to 5,920,472
_5134
Pf6N2E2_5135 - FIG00953333: hypothetical protein, at 5,920,556 to 5,921,182
_5135
Pf6N2E2_5136 - FIG028593: membrane protein, at 5,921,413 to 5,922,099
_5136
Position (kb) 5920
5921
5922 Strain fitness (log2 ratio) -2
-1
0
1 at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.743 kb on - strand at 5919.809 kb on + strand at 5919.819 kb on + strand at 5919.820 kb on - strand at 5919.820 kb on - strand at 5919.933 kb on + strand, within Pf6N2E2_5133 at 5919.933 kb on + strand, within Pf6N2E2_5133 at 5919.934 kb on - strand, within Pf6N2E2_5133 at 5919.979 kb on + strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5920.020 kb on + strand at 5920.055 kb on - strand at 5920.117 kb on - strand, within Pf6N2E2_5134 at 5920.117 kb on - strand, within Pf6N2E2_5134 at 5920.163 kb on + strand, within Pf6N2E2_5134 at 5920.164 kb on - strand, within Pf6N2E2_5134 at 5920.164 kb on - strand, within Pf6N2E2_5134 at 5920.695 kb on + strand, within Pf6N2E2_5135 at 5920.696 kb on - strand, within Pf6N2E2_5135 at 5920.800 kb on + strand, within Pf6N2E2_5135 at 5920.801 kb on - strand, within Pf6N2E2_5135 at 5920.887 kb on - strand, within Pf6N2E2_5135 at 5920.887 kb on - strand, within Pf6N2E2_5135 at 5921.054 kb on + strand, within Pf6N2E2_5135 at 5921.054 kb on + strand, within Pf6N2E2_5135 at 5921.054 kb on + strand, within Pf6N2E2_5135 at 5921.054 kb on + strand, within Pf6N2E2_5135 at 5921.055 kb on - strand, within Pf6N2E2_5135 at 5921.055 kb on - strand, within Pf6N2E2_5135 at 5921.055 kb on - strand, within Pf6N2E2_5135 at 5921.162 kb on + strand at 5921.162 kb on + strand at 5921.162 kb on + strand at 5921.162 kb on + strand at 5921.162 kb on + strand at 5921.163 kb on - strand at 5921.163 kb on - strand at 5921.194 kb on + strand at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.257 kb on - strand at 5921.406 kb on + strand at 5921.407 kb on - strand at 5921.407 kb on - strand at 5921.432 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.472 kb on - strand at 5921.472 kb on - strand at 5921.614 kb on + strand, within Pf6N2E2_5136 at 5921.760 kb on + strand, within Pf6N2E2_5136 at 5921.761 kb on - strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.908 kb on + strand, within Pf6N2E2_5136 at 5921.909 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.933 kb on - strand, within Pf6N2E2_5136 at 5921.957 kb on - strand, within Pf6N2E2_5136 at 5921.997 kb on + strand, within Pf6N2E2_5136 at 5921.998 kb on - strand, within Pf6N2E2_5136 at 5922.061 kb on + strand at 5922.062 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 5,919,724 + +0.5 5,919,724 + -1.6 5,919,724 + +1.3 5,919,724 + +0.0 5,919,743 - +0.1 5,919,809 + -0.4 5,919,819 + -1.3 5,919,820 - +0.9 5,919,820 - +0.2 5,919,933 + Pf6N2E2_5133 0.73 -0.0 5,919,933 + Pf6N2E2_5133 0.73 +0.3 5,919,934 - Pf6N2E2_5133 0.74 +0.8 5,919,979 + -0.0 5,919,980 - +0.6 5,919,980 - -0.5 5,919,980 - +1.3 5,919,980 - -0.4 5,920,020 + +1.1 5,920,055 - -0.1 5,920,117 - Pf6N2E2_5134 0.19 +0.8 5,920,117 - Pf6N2E2_5134 0.19 +1.5 5,920,163 + Pf6N2E2_5134 0.30 -1.1 5,920,164 - Pf6N2E2_5134 0.30 +1.0 5,920,164 - Pf6N2E2_5134 0.30 +0.0 5,920,695 + Pf6N2E2_5135 0.22 -0.7 5,920,696 - Pf6N2E2_5135 0.22 -0.7 5,920,800 + Pf6N2E2_5135 0.39 -1.5 5,920,801 - Pf6N2E2_5135 0.39 -0.5 5,920,887 - Pf6N2E2_5135 0.53 -0.7 5,920,887 - Pf6N2E2_5135 0.53 +0.4 5,921,054 + Pf6N2E2_5135 0.79 -0.0 5,921,054 + Pf6N2E2_5135 0.79 -1.0 5,921,054 + Pf6N2E2_5135 0.79 -0.2 5,921,054 + Pf6N2E2_5135 0.79 -0.3 5,921,055 - Pf6N2E2_5135 0.80 +0.8 5,921,055 - Pf6N2E2_5135 0.80 -0.7 5,921,055 - Pf6N2E2_5135 0.80 +0.1 5,921,162 + +0.1 5,921,162 + +1.7 5,921,162 + +1.1 5,921,162 + +1.4 5,921,162 + +0.1 5,921,163 - +1.1 5,921,163 - -0.5 5,921,194 + +0.2 5,921,256 + -0.1 5,921,256 + -0.7 5,921,256 + +1.1 5,921,257 - +0.4 5,921,406 + -0.5 5,921,407 - -0.0 5,921,407 - -0.2 5,921,432 + -0.6 5,921,467 + +1.1 5,921,467 + +0.5 5,921,467 + -0.4 5,921,468 - +0.5 5,921,468 - +0.5 5,921,468 - +0.4 5,921,471 + -0.7 5,921,471 + +0.5 5,921,471 + +0.4 5,921,472 - +0.4 5,921,472 - +0.1 5,921,614 + Pf6N2E2_5136 0.29 -0.1 5,921,760 + Pf6N2E2_5136 0.51 -1.0 5,921,761 - Pf6N2E2_5136 0.51 +0.4 5,921,830 + Pf6N2E2_5136 0.61 +0.2 5,921,830 + Pf6N2E2_5136 0.61 +1.1 5,921,830 + Pf6N2E2_5136 0.61 +0.6 5,921,830 + Pf6N2E2_5136 0.61 +1.4 5,921,830 + Pf6N2E2_5136 0.61 -0.3 5,921,830 + Pf6N2E2_5136 0.61 -1.2 5,921,830 + Pf6N2E2_5136 0.61 +0.2 5,921,830 + Pf6N2E2_5136 0.61 -1.1 5,921,830 + Pf6N2E2_5136 0.61 +0.7 5,921,830 + Pf6N2E2_5136 0.61 -0.1 5,921,831 - Pf6N2E2_5136 0.61 -1.8 5,921,831 - Pf6N2E2_5136 0.61 +0.3 5,921,831 - Pf6N2E2_5136 0.61 +0.8 5,921,831 - Pf6N2E2_5136 0.61 +0.6 5,921,831 - Pf6N2E2_5136 0.61 +0.2 5,921,831 - Pf6N2E2_5136 0.61 +0.1 5,921,831 - Pf6N2E2_5136 0.61 -1.0 5,921,831 - Pf6N2E2_5136 0.61 +0.9 5,921,831 - Pf6N2E2_5136 0.61 +0.1 5,921,831 - Pf6N2E2_5136 0.61 -0.5 5,921,831 - Pf6N2E2_5136 0.61 +0.2 5,921,831 - Pf6N2E2_5136 0.61 -0.7 5,921,832 + Pf6N2E2_5136 0.61 +0.1 5,921,832 + Pf6N2E2_5136 0.61 -0.3 5,921,832 + Pf6N2E2_5136 0.61 -2.6 5,921,832 + Pf6N2E2_5136 0.61 +0.2 5,921,832 + Pf6N2E2_5136 0.61 -0.6 5,921,832 + Pf6N2E2_5136 0.61 -0.2 5,921,832 + Pf6N2E2_5136 0.61 +0.3 5,921,833 - Pf6N2E2_5136 0.61 +0.4 5,921,833 - Pf6N2E2_5136 0.61 +0.4 5,921,833 - Pf6N2E2_5136 0.61 -0.4 5,921,908 + Pf6N2E2_5136 0.72 +0.1 5,921,909 - Pf6N2E2_5136 0.72 +0.3 5,921,917 - Pf6N2E2_5136 0.73 -0.2 5,921,917 - Pf6N2E2_5136 0.73 -0.1 5,921,917 - Pf6N2E2_5136 0.73 -0.7 5,921,918 + Pf6N2E2_5136 0.74 -1.5 5,921,918 + Pf6N2E2_5136 0.74 +1.1 5,921,918 + Pf6N2E2_5136 0.74 +0.2 5,921,918 + Pf6N2E2_5136 0.74 +0.7 5,921,919 - Pf6N2E2_5136 0.74 -1.4 5,921,919 - Pf6N2E2_5136 0.74 -0.1 5,921,919 - Pf6N2E2_5136 0.74 +0.4 5,921,919 - Pf6N2E2_5136 0.74 +0.3 5,921,919 - Pf6N2E2_5136 0.74 -0.4 5,921,933 - Pf6N2E2_5136 0.76 -0.9 5,921,957 - Pf6N2E2_5136 0.79 +0.7 5,921,997 + Pf6N2E2_5136 0.85 -2.3 5,921,998 - Pf6N2E2_5136 0.85 +0.9 5,922,061 + +0.1 5,922,062 - -0.1 5,922,173 - +0.5 5,922,173 - -0.7 5,922,173 - -0.4
Or see this region's nucleotide sequence