Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4744

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4741 and Pf6N2E2_4742 are separated by 22 nucleotidesPf6N2E2_4742 and Pf6N2E2_4743 are separated by 80 nucleotidesPf6N2E2_4743 and Pf6N2E2_4744 overlap by 4 nucleotidesPf6N2E2_4744 and Pf6N2E2_4745 are separated by 66 nucleotidesPf6N2E2_4745 and Pf6N2E2_4746 are separated by 4 nucleotides Pf6N2E2_4741 - hypothetical protein, at 5,478,603 to 5,478,731 _4741 Pf6N2E2_4742 - Glutathione S-transferase family protein, at 5,478,754 to 5,479,383 _4742 Pf6N2E2_4743 - hypothetical protein, at 5,479,464 to 5,479,643 _4743 Pf6N2E2_4744 - putative iron-regulated membrane protein, at 5,479,640 to 5,480,770 _4744 Pf6N2E2_4745 - hypothetical protein, at 5,480,837 to 5,480,995 _4745 Pf6N2E2_4746 - Ferrichrome-iron receptor @ Ferric siderophore receptor, TonB dependent, at 5,481,000 to 5,483,426 _4746 Position (kb) 5479 5480 5481Strain fitness (log2 ratio) -2 -1 0 1 2at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.704 kb on + strand, within Pf6N2E2_4741at 5478.705 kb on - strand, within Pf6N2E2_4741at 5478.705 kb on - strand, within Pf6N2E2_4741at 5478.834 kb on + strand, within Pf6N2E2_4742at 5478.834 kb on + strand, within Pf6N2E2_4742at 5478.835 kb on - strand, within Pf6N2E2_4742at 5479.019 kb on - strand, within Pf6N2E2_4742at 5479.415 kb on - strandat 5479.419 kb on + strandat 5479.605 kb on - strand, within Pf6N2E2_4743at 5479.705 kb on - strandat 5479.705 kb on - strandat 5479.705 kb on - strandat 5479.780 kb on - strand, within Pf6N2E2_4744at 5479.824 kb on + strand, within Pf6N2E2_4744at 5479.824 kb on + strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5479.825 kb on - strand, within Pf6N2E2_4744at 5480.271 kb on + strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.449 kb on + strand, within Pf6N2E2_4744at 5480.449 kb on + strand, within Pf6N2E2_4744at 5480.450 kb on - strand, within Pf6N2E2_4744at 5480.710 kb on + strandat 5480.711 kb on - strandat 5480.812 kb on + strandat 5480.812 kb on + strandat 5480.812 kb on + strandat 5480.813 kb on - strandat 5480.813 kb on - strandat 5481.046 kb on + strandat 5481.046 kb on + strandat 5481.049 kb on + strandat 5481.049 kb on + strandat 5481.049 kb on + strandat 5481.050 kb on - strandat 5481.055 kb on + strandat 5481.055 kb on + strandat 5481.056 kb on - strandat 5481.056 kb on - strandat 5481.079 kb on + strandat 5481.079 kb on + strandat 5481.079 kb on + strandat 5481.080 kb on - strandat 5481.080 kb on - strandat 5481.080 kb on - strandat 5481.157 kb on + strandat 5481.157 kb on + strandat 5481.175 kb on + strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.182 kb on + strandat 5481.182 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.457 kb on - strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.673 kb on + strand, within Pf6N2E2_4746at 5481.700 kb on + strand, within Pf6N2E2_4746at 5481.700 kb on + strand, within Pf6N2E2_4746

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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5,478,704 + Pf6N2E2_4741 0.78 +0.0
5,478,704 + Pf6N2E2_4741 0.78 -0.5
5,478,704 + Pf6N2E2_4741 0.78 +0.6
5,478,705 - Pf6N2E2_4741 0.79 -0.4
5,478,705 - Pf6N2E2_4741 0.79 -0.3
5,478,834 + Pf6N2E2_4742 0.13 -0.5
5,478,834 + Pf6N2E2_4742 0.13 +0.5
5,478,835 - Pf6N2E2_4742 0.13 +0.1
5,479,019 - Pf6N2E2_4742 0.42 -0.7
5,479,415 - +0.9
5,479,419 + -0.4
5,479,605 - Pf6N2E2_4743 0.78 -1.8
5,479,705 - +0.3
5,479,705 - -0.8
5,479,705 - -2.4
5,479,780 - Pf6N2E2_4744 0.12 +0.9
5,479,824 + Pf6N2E2_4744 0.16 -0.2
5,479,824 + Pf6N2E2_4744 0.16 -1.6
5,479,825 - Pf6N2E2_4744 0.16 +0.1
5,479,825 - Pf6N2E2_4744 0.16 +0.2
5,479,825 - Pf6N2E2_4744 0.16 +1.3
5,480,271 + Pf6N2E2_4744 0.56 +1.6
5,480,272 - Pf6N2E2_4744 0.56 +0.0
5,480,272 - Pf6N2E2_4744 0.56 +0.1
5,480,272 - Pf6N2E2_4744 0.56 +0.1
5,480,449 + Pf6N2E2_4744 0.72 +0.1
5,480,449 + Pf6N2E2_4744 0.72 +1.0
5,480,450 - Pf6N2E2_4744 0.72 +0.3
5,480,710 + -0.2
5,480,711 - +0.4
5,480,812 + -0.1
5,480,812 + -1.8
5,480,812 + -1.0
5,480,813 - +0.6
5,480,813 - -0.6
5,481,046 + +0.2
5,481,046 + -0.9
5,481,049 + +0.8
5,481,049 + +1.0
5,481,049 + +1.0
5,481,050 - -0.3
5,481,055 + +1.1
5,481,055 + -0.1
5,481,056 - +0.6
5,481,056 - -0.7
5,481,079 + +0.2
5,481,079 + +0.4
5,481,079 + -0.1
5,481,080 - -0.3
5,481,080 - -1.7
5,481,080 - -0.7
5,481,157 + -0.4
5,481,157 + +1.1
5,481,175 + -0.5
5,481,176 - +0.4
5,481,176 - -0.7
5,481,176 - -0.0
5,481,176 - -0.2
5,481,182 + +0.3
5,481,182 + +0.6
5,481,184 + +1.0
5,481,184 + +0.4
5,481,184 + +0.3
5,481,184 + -0.6
5,481,184 + +1.1
5,481,184 + +1.1
5,481,184 + -2.0
5,481,184 + -2.1
5,481,184 + -0.7
5,481,184 + +0.6
5,481,185 - -0.0
5,481,185 - -0.2
5,481,185 - +0.6
5,481,185 - -0.1
5,481,185 - -0.1
5,481,226 + +0.7
5,481,226 + -0.0
5,481,226 + -0.1
5,481,226 + +0.1
5,481,227 - +0.2
5,481,227 - +0.9
5,481,227 - +0.9
5,481,227 - +1.3
5,481,241 + +0.5
5,481,241 + +0.2
5,481,241 + -0.9
5,481,241 + +0.8
5,481,242 - -0.4
5,481,242 - -0.5
5,481,242 - -1.0
5,481,242 - +0.8
5,481,242 - -0.9
5,481,242 - +0.5
5,481,242 - +0.2
5,481,296 - Pf6N2E2_4746 0.12 +1.1
5,481,296 - Pf6N2E2_4746 0.12 +1.0
5,481,296 - Pf6N2E2_4746 0.12 +0.7
5,481,388 + Pf6N2E2_4746 0.16 +0.3
5,481,388 + Pf6N2E2_4746 0.16 +0.2
5,481,388 + Pf6N2E2_4746 0.16 +0.2
5,481,388 + Pf6N2E2_4746 0.16 +0.1
5,481,389 - Pf6N2E2_4746 0.16 +1.9
5,481,389 - Pf6N2E2_4746 0.16 -0.3
5,481,389 - Pf6N2E2_4746 0.16 +0.8
5,481,389 - Pf6N2E2_4746 0.16 +0.4
5,481,394 + Pf6N2E2_4746 0.16 -0.5
5,481,394 + Pf6N2E2_4746 0.16 -1.4
5,481,394 + Pf6N2E2_4746 0.16 +1.6
5,481,394 + Pf6N2E2_4746 0.16 -0.4
5,481,394 + Pf6N2E2_4746 0.16 +1.5
5,481,395 - Pf6N2E2_4746 0.16 -0.2
5,481,395 - Pf6N2E2_4746 0.16 +1.0
5,481,395 - Pf6N2E2_4746 0.16 -0.3
5,481,395 - Pf6N2E2_4746 0.16 +0.7
5,481,457 - Pf6N2E2_4746 0.19 -0.1
5,481,462 + Pf6N2E2_4746 0.19 -1.0
5,481,462 + Pf6N2E2_4746 0.19 +1.1
5,481,462 + Pf6N2E2_4746 0.19 -1.6
5,481,462 + Pf6N2E2_4746 0.19 +0.8
5,481,463 - Pf6N2E2_4746 0.19 -0.1
5,481,463 - Pf6N2E2_4746 0.19 +0.6
5,481,463 - Pf6N2E2_4746 0.19 -0.9
5,481,568 + Pf6N2E2_4746 0.23 -1.3
5,481,568 + Pf6N2E2_4746 0.23 -1.2
5,481,568 + Pf6N2E2_4746 0.23 +0.3
5,481,569 - Pf6N2E2_4746 0.23 +0.4
5,481,569 - Pf6N2E2_4746 0.23 -0.6
5,481,569 - Pf6N2E2_4746 0.23 +0.4
5,481,569 - Pf6N2E2_4746 0.23 +1.1
5,481,673 + Pf6N2E2_4746 0.28 +1.1
5,481,700 + Pf6N2E2_4746 0.29 +1.1
5,481,700 + Pf6N2E2_4746 0.29 +1.8

Or see this region's nucleotide sequence