Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3947

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3946 and Pf6N2E2_3947 are separated by 115 nucleotidesPf6N2E2_3947 and Pf6N2E2_3948 are separated by 86 nucleotides Pf6N2E2_3946 - Thymidylate synthase (EC 2.1.1.45), at 4,583,596 to 4,584,567 _3946 Pf6N2E2_3947 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 4,584,683 to 4,585,129 _3947 Pf6N2E2_3948 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 4,585,216 to 4,587,435 _3948 Position (kb) 4584 4585 4586Strain fitness (log2 ratio) -3 -2 -1 0 1at 4585.024 kb on - strand, within Pf6N2E2_3947at 4585.071 kb on + strand, within Pf6N2E2_3947at 4585.074 kb on + strand, within Pf6N2E2_3947at 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.180 kb on + strandat 4585.717 kb on + strand, within Pf6N2E2_3948at 4585.717 kb on + strand, within Pf6N2E2_3948at 4585.717 kb on + strand, within Pf6N2E2_3948at 4585.717 kb on + strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.718 kb on - strand, within Pf6N2E2_3948at 4585.970 kb on + strand, within Pf6N2E2_3948at 4585.970 kb on + strand, within Pf6N2E2_3948at 4585.971 kb on - strand, within Pf6N2E2_3948at 4585.971 kb on - strand, within Pf6N2E2_3948at 4585.971 kb on - strand, within Pf6N2E2_3948

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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4,585,024 - Pf6N2E2_3947 0.76 +0.1
4,585,071 + Pf6N2E2_3947 0.87 -0.8
4,585,074 + Pf6N2E2_3947 0.87 -1.2
4,585,146 + -0.1
4,585,146 + -0.3
4,585,146 + +0.5
4,585,146 + +0.4
4,585,146 + -0.6
4,585,146 + +0.6
4,585,147 - -0.2
4,585,147 - -0.4
4,585,147 - -0.0
4,585,147 - -0.3
4,585,147 - -0.3
4,585,147 - -3.7
4,585,147 - +0.6
4,585,147 - +0.1
4,585,180 + +0.8
4,585,717 + Pf6N2E2_3948 0.23 +1.0
4,585,717 + Pf6N2E2_3948 0.23 -0.2
4,585,717 + Pf6N2E2_3948 0.23 +0.4
4,585,717 + Pf6N2E2_3948 0.23 -0.8
4,585,718 - Pf6N2E2_3948 0.23 +0.1
4,585,718 - Pf6N2E2_3948 0.23 +0.9
4,585,718 - Pf6N2E2_3948 0.23 +0.2
4,585,718 - Pf6N2E2_3948 0.23 +0.4
4,585,718 - Pf6N2E2_3948 0.23 +0.5
4,585,718 - Pf6N2E2_3948 0.23 +0.2
4,585,970 + Pf6N2E2_3948 0.34 +0.5
4,585,970 + Pf6N2E2_3948 0.34 -0.1
4,585,971 - Pf6N2E2_3948 0.34 +0.2
4,585,971 - Pf6N2E2_3948 0.34 +0.4
4,585,971 - Pf6N2E2_3948 0.34 +0.3

Or see this region's nucleotide sequence