Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07570

Experiment: Mc formate, casamino free, with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07555 and MMP_RS07560 are separated by 173 nucleotidesMMP_RS07560 and MMP_RS07565 are separated by 129 nucleotidesMMP_RS07565 and MMP_RS07570 are separated by 101 nucleotidesMMP_RS07570 and MMP_RS07575 are separated by 15 nucleotidesMMP_RS07575 and MMP_RS07580 are separated by 55 nucleotides MMP_RS07555: MMP_RS07555 - monovalent cation/H+ antiporter subunit E, at 1,429,995 to 1,430,315 _RS07555 MMP_RS07560: MMP_RS07560 - prefoldin subunit alpha, at 1,430,489 to 1,430,923 _RS07560 MMP_RS07565: MMP_RS07565 - tRNA-Val, at 1,431,053 to 1,431,129 _RS07565 MMP_RS07570: MMP_RS07570 - nucleotidyltransferase family protein, at 1,431,231 to 1,432,280 _RS07570 MMP_RS07575: MMP_RS07575 - RNA ligase partner protein, at 1,432,296 to 1,432,967 _RS07575 MMP_RS07580: MMP_RS07580 - DUF356 domain-containing protein, at 1,433,023 to 1,433,403 _RS07580 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1430.350 kb on - strandat 1430.354 kb on - strandat 1430.355 kb on + strandat 1430.356 kb on - strandat 1430.356 kb on - strandat 1430.358 kb on - strandat 1430.359 kb on + strandat 1430.359 kb on + strandat 1430.359 kb on + strandat 1430.360 kb on - strandat 1430.360 kb on - strandat 1430.361 kb on + strandat 1430.361 kb on + strandat 1430.364 kb on - strandat 1430.452 kb on - strandat 1430.453 kb on + strandat 1430.456 kb on - strandat 1430.456 kb on - strandat 1430.555 kb on + strand, within MMP_RS07560at 1430.745 kb on - strand, within MMP_RS07560at 1430.746 kb on + strand, within MMP_RS07560at 1430.746 kb on + strand, within MMP_RS07560at 1430.809 kb on + strand, within MMP_RS07560at 1430.809 kb on + strand, within MMP_RS07560at 1430.921 kb on - strandat 1430.973 kb on + strandat 1431.043 kb on + strandat 1431.503 kb on - strand, within MMP_RS07570at 1431.683 kb on + strand, within MMP_RS07570at 1431.729 kb on + strand, within MMP_RS07570at 1431.729 kb on + strand, within MMP_RS07570at 1431.731 kb on - strand, within MMP_RS07570at 1431.731 kb on - strand, within MMP_RS07570at 1431.786 kb on - strand, within MMP_RS07570at 1431.787 kb on + strand, within MMP_RS07570at 1431.787 kb on + strand, within MMP_RS07570at 1431.807 kb on - strand, within MMP_RS07570at 1431.807 kb on - strand, within MMP_RS07570at 1431.932 kb on - strand, within MMP_RS07570at 1431.942 kb on + strand, within MMP_RS07570at 1432.034 kb on - strand, within MMP_RS07570at 1432.035 kb on + strand, within MMP_RS07570at 1432.062 kb on - strand, within MMP_RS07570at 1432.077 kb on + strand, within MMP_RS07570at 1432.108 kb on + strand, within MMP_RS07570at 1432.134 kb on - strand, within MMP_RS07570at 1432.212 kb on + strandat 1432.222 kb on + strandat 1432.322 kb on - strandat 1432.323 kb on + strandat 1432.585 kb on - strand, within MMP_RS07575at 1432.585 kb on - strand, within MMP_RS07575at 1432.599 kb on + strand, within MMP_RS07575at 1432.678 kb on + strand, within MMP_RS07575at 1432.984 kb on + strandat 1433.098 kb on + strand, within MMP_RS07580at 1433.103 kb on + strand, within MMP_RS07580at 1433.109 kb on + strand, within MMP_RS07580

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Threonine
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1,430,350 - -1.4
1,430,354 - -0.9
1,430,355 + -1.6
1,430,356 - -0.8
1,430,356 - -1.7
1,430,358 - -0.4
1,430,359 + -0.1
1,430,359 + -1.6
1,430,359 + -0.6
1,430,360 - -1.4
1,430,360 - +0.9
1,430,361 + -1.2
1,430,361 + +0.8
1,430,364 - -3.4
1,430,452 - -0.8
1,430,453 + -1.6
1,430,456 - +0.1
1,430,456 - -0.1
1,430,555 + MMP_RS07560 0.15 -1.0
1,430,745 - MMP_RS07560 0.59 +1.3
1,430,746 + MMP_RS07560 0.59 +0.2
1,430,746 + MMP_RS07560 0.59 -1.7
1,430,809 + MMP_RS07560 0.74 +0.3
1,430,809 + MMP_RS07560 0.74 -0.2
1,430,921 - +0.3
1,430,973 + +1.1
1,431,043 + +2.3
1,431,503 - MMP_RS07570 0.26 +0.7
1,431,683 + MMP_RS07570 0.43 -1.1
1,431,729 + MMP_RS07570 0.47 +1.0
1,431,729 + MMP_RS07570 0.47 -1.2
1,431,731 - MMP_RS07570 0.48 +2.2
1,431,731 - MMP_RS07570 0.48 +0.8
1,431,786 - MMP_RS07570 0.53 -1.8
1,431,787 + MMP_RS07570 0.53 -0.6
1,431,787 + MMP_RS07570 0.53 +0.3
1,431,807 - MMP_RS07570 0.55 +1.1
1,431,807 - MMP_RS07570 0.55 +0.7
1,431,932 - MMP_RS07570 0.67 +2.8
1,431,942 + MMP_RS07570 0.68 +0.7
1,432,034 - MMP_RS07570 0.76 -0.1
1,432,035 + MMP_RS07570 0.77 +3.0
1,432,062 - MMP_RS07570 0.79 +0.6
1,432,077 + MMP_RS07570 0.81 +1.2
1,432,108 + MMP_RS07570 0.84 +1.3
1,432,134 - MMP_RS07570 0.86 +1.4
1,432,212 + -1.3
1,432,222 + +2.4
1,432,322 - -0.7
1,432,323 + -0.8
1,432,585 - MMP_RS07575 0.43 -0.6
1,432,585 - MMP_RS07575 0.43 -1.1
1,432,599 + MMP_RS07575 0.45 -1.5
1,432,678 + MMP_RS07575 0.57 +0.1
1,432,984 + +0.5
1,433,098 + MMP_RS07580 0.20 -1.2
1,433,103 + MMP_RS07580 0.21 +0.8
1,433,109 + MMP_RS07580 0.23 +0.9

Or see this region's nucleotide sequence