Strain Fitness in Marinobacter adhaerens HP15 around HP15_822

Experiment: m.b. Nalidixic 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_821 and HP15_822 are separated by 188 nucleotidesHP15_822 and HP15_823 are separated by 51 nucleotides HP15_821: HP15_821 - acyl-CoA dehydrogenase family protein, at 838,890 to 840,101 _821 HP15_822: HP15_822 - short-chain dehydrogenase/reductase SDR, at 840,290 to 841,108 _822 HP15_823: HP15_823 - phosphotransferase enzyme family protein, at 841,160 to 842,224 _823 Position (kb) 840 841 842Strain fitness (log2 ratio) -1 0 1 2at 839.487 kb on - strand, within HP15_821at 839.487 kb on - strand, within HP15_821at 839.493 kb on + strand, within HP15_821at 839.564 kb on - strand, within HP15_821at 839.653 kb on + strand, within HP15_821at 839.820 kb on - strand, within HP15_821at 839.883 kb on + strand, within HP15_821at 839.925 kb on + strand, within HP15_821at 839.940 kb on - strand, within HP15_821at 839.973 kb on - strand, within HP15_821at 840.073 kb on + strandat 840.073 kb on + strandat 840.073 kb on + strandat 840.073 kb on + strandat 840.073 kb on + strandat 840.081 kb on - strandat 840.081 kb on - strandat 840.081 kb on - strandat 840.081 kb on - strandat 840.081 kb on - strandat 840.337 kb on + strandat 840.401 kb on - strand, within HP15_822at 840.551 kb on + strand, within HP15_822at 840.746 kb on - strand, within HP15_822at 840.746 kb on - strand, within HP15_822at 840.748 kb on + strand, within HP15_822at 840.820 kb on - strand, within HP15_822at 840.962 kb on + strand, within HP15_822at 840.983 kb on + strand, within HP15_822at 840.991 kb on - strand, within HP15_822at 841.001 kb on - strand, within HP15_822at 841.042 kb on - strandat 841.042 kb on - strandat 841.067 kb on + strandat 841.153 kb on + strandat 841.330 kb on + strand, within HP15_823at 841.504 kb on + strand, within HP15_823at 841.512 kb on + strand, within HP15_823at 841.572 kb on + strand, within HP15_823at 841.629 kb on + strand, within HP15_823at 841.642 kb on - strand, within HP15_823at 841.656 kb on - strand, within HP15_823at 841.663 kb on - strand, within HP15_823at 841.690 kb on + strand, within HP15_823at 841.708 kb on + strand, within HP15_823at 841.726 kb on + strand, within HP15_823at 841.767 kb on + strand, within HP15_823at 841.777 kb on - strand, within HP15_823at 841.857 kb on + strand, within HP15_823at 841.859 kb on + strand, within HP15_823at 841.867 kb on - strand, within HP15_823at 841.926 kb on + strand, within HP15_823at 841.934 kb on - strand, within HP15_823at 842.022 kb on + strand, within HP15_823at 842.108 kb on + strand, within HP15_823

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml
remove
839,487 - HP15_821 0.49 -0.1
839,487 - HP15_821 0.49 +0.4
839,493 + HP15_821 0.50 -0.5
839,564 - HP15_821 0.56 +0.2
839,653 + HP15_821 0.63 +0.5
839,820 - HP15_821 0.77 +0.0
839,883 + HP15_821 0.82 -0.3
839,925 + HP15_821 0.85 +0.5
839,940 - HP15_821 0.87 -0.2
839,973 - HP15_821 0.89 -0.2
840,073 + -0.1
840,073 + -0.3
840,073 + -0.0
840,073 + -1.1
840,073 + +1.5
840,081 - -0.2
840,081 - +0.1
840,081 - +0.5
840,081 - +2.7
840,081 - +1.1
840,337 + -0.6
840,401 - HP15_822 0.14 -0.4
840,551 + HP15_822 0.32 +0.3
840,746 - HP15_822 0.56 +0.1
840,746 - HP15_822 0.56 +0.3
840,748 + HP15_822 0.56 -0.3
840,820 - HP15_822 0.65 +0.9
840,962 + HP15_822 0.82 +0.3
840,983 + HP15_822 0.85 +0.4
840,991 - HP15_822 0.86 +0.2
841,001 - HP15_822 0.87 -0.7
841,042 - -0.5
841,042 - -0.6
841,067 + +0.9
841,153 + +0.3
841,330 + HP15_823 0.16 -0.3
841,504 + HP15_823 0.32 -0.5
841,512 + HP15_823 0.33 -0.1
841,572 + HP15_823 0.39 +0.2
841,629 + HP15_823 0.44 -0.4
841,642 - HP15_823 0.45 -0.4
841,656 - HP15_823 0.47 +0.8
841,663 - HP15_823 0.47 -0.2
841,690 + HP15_823 0.50 +0.4
841,708 + HP15_823 0.51 +0.2
841,726 + HP15_823 0.53 -0.4
841,767 + HP15_823 0.57 +0.3
841,777 - HP15_823 0.58 -0.2
841,857 + HP15_823 0.65 -0.0
841,859 + HP15_823 0.66 +0.3
841,867 - HP15_823 0.66 +0.3
841,926 + HP15_823 0.72 -0.6
841,934 - HP15_823 0.73 +0.3
842,022 + HP15_823 0.81 +0.0
842,108 + HP15_823 0.89 +0.2

Or see this region's nucleotide sequence