Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2622 and HP15_2623 are separated by 353 nucleotides HP15_2623 and HP15_2624 are separated by 90 nucleotides
HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715
_2622
HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184
_2623
HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687
_2624
Position (kb)
2774
2775
2776 Strain fitness (log2 ratio)
-1
0
1
2 at 2773.105 kb on + strand, within HP15_2622 at 2773.113 kb on - strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.249 kb on + strand, within HP15_2622 at 2773.256 kb on - strand, within HP15_2622 at 2773.266 kb on - strand, within HP15_2622 at 2773.392 kb on - strand, within HP15_2622 at 2773.425 kb on - strand, within HP15_2622 at 2773.517 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.557 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.879 kb on - strand at 2773.975 kb on + strand at 2774.006 kb on - strand at 2774.025 kb on - strand at 2774.184 kb on - strand, within HP15_2623 at 2774.255 kb on + strand, within HP15_2623 at 2774.263 kb on - strand, within HP15_2623 at 2774.301 kb on + strand, within HP15_2623 at 2774.376 kb on - strand, within HP15_2623 at 2774.567 kb on - strand, within HP15_2623 at 2774.615 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.672 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.743 kb on + strand, within HP15_2623 at 2774.773 kb on - strand, within HP15_2623 at 2774.793 kb on - strand, within HP15_2623 at 2774.817 kb on + strand, within HP15_2623 at 2774.822 kb on + strand, within HP15_2623 at 2774.830 kb on - strand, within HP15_2623 at 2774.896 kb on + strand, within HP15_2623 at 2774.904 kb on - strand, within HP15_2623 at 2774.947 kb on - strand, within HP15_2623 at 2774.983 kb on - strand, within HP15_2623 at 2775.033 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.083 kb on - strand at 2775.152 kb on - strand at 2775.384 kb on + strand at 2775.386 kb on - strand at 2775.408 kb on - strand at 2775.541 kb on - strand, within HP15_2624 at 2775.666 kb on + strand, within HP15_2624 at 2775.693 kb on + strand, within HP15_2624 at 2775.785 kb on + strand, within HP15_2624 at 2775.872 kb on - strand, within HP15_2624 at 2775.930 kb on - strand, within HP15_2624 at 2775.995 kb on - strand, within HP15_2624 at 2776.021 kb on - strand, within HP15_2624 at 2776.103 kb on - strand, within HP15_2624 at 2776.126 kb on + strand, within HP15_2624 at 2776.167 kb on + strand, within HP15_2624 at 2776.175 kb on - strand, within HP15_2624
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 2,773,105 + HP15_2622 0.18 +0.2 2,773,113 - HP15_2622 0.19 -0.2 2,773,188 + HP15_2622 0.29 +0.5 2,773,188 + HP15_2622 0.29 +0.2 2,773,249 + HP15_2622 0.37 +0.0 2,773,256 - HP15_2622 0.38 +0.4 2,773,266 - HP15_2622 0.40 -0.5 2,773,392 - HP15_2622 0.57 +0.1 2,773,425 - HP15_2622 0.61 +1.9 2,773,517 - HP15_2622 0.73 +1.1 2,773,555 - HP15_2622 0.78 -0.2 2,773,555 - HP15_2622 0.78 -0.0 2,773,557 + HP15_2622 0.79 +0.4 2,773,577 + HP15_2622 0.81 -0.6 2,773,577 + HP15_2622 0.81 +0.6 2,773,879 - +0.5 2,773,975 + -0.3 2,774,006 - +0.1 2,774,025 - -0.6 2,774,184 - HP15_2623 0.10 +0.5 2,774,255 + HP15_2623 0.17 -1.3 2,774,263 - HP15_2623 0.17 -0.2 2,774,301 + HP15_2623 0.21 -0.3 2,774,376 - HP15_2623 0.28 -0.4 2,774,567 - HP15_2623 0.45 +1.2 2,774,615 + HP15_2623 0.49 -0.3 2,774,671 + HP15_2623 0.54 -0.5 2,774,671 + HP15_2623 0.54 -1.1 2,774,672 - HP15_2623 0.54 -0.6 2,774,677 - HP15_2623 0.54 -0.4 2,774,677 - HP15_2623 0.54 -0.4 2,774,743 + HP15_2623 0.60 -0.3 2,774,773 - HP15_2623 0.63 +1.5 2,774,793 - HP15_2623 0.65 -0.1 2,774,817 + HP15_2623 0.67 -0.3 2,774,822 + HP15_2623 0.67 -0.2 2,774,830 - HP15_2623 0.68 -1.1 2,774,896 + HP15_2623 0.74 -0.9 2,774,904 - HP15_2623 0.75 -0.2 2,774,947 - HP15_2623 0.79 -0.9 2,774,983 - HP15_2623 0.82 -0.1 2,775,033 - HP15_2623 0.86 -0.2 2,775,047 - HP15_2623 0.88 -0.2 2,775,047 - HP15_2623 0.88 -0.2 2,775,047 - HP15_2623 0.88 -0.2 2,775,083 - -0.1 2,775,152 - +0.2 2,775,384 + -0.7 2,775,386 - -1.1 2,775,408 - -0.4 2,775,541 - HP15_2624 0.19 +0.9 2,775,666 + HP15_2624 0.28 -0.1 2,775,693 + HP15_2624 0.30 -0.7 2,775,785 + HP15_2624 0.36 +0.4 2,775,872 - HP15_2624 0.42 -0.4 2,775,930 - HP15_2624 0.46 -0.6 2,775,995 - HP15_2624 0.51 -0.3 2,776,021 - HP15_2624 0.53 -0.8 2,776,103 - HP15_2624 0.59 -0.3 2,776,126 + HP15_2624 0.60 -0.8 2,776,167 + HP15_2624 0.63 -0.2 2,776,175 - HP15_2624 0.64 -0.4
Or see this region's nucleotide sequence