Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_183 and HP15_184 are separated by 85 nucleotides HP15_184 and HP15_185 are separated by 203 nucleotides HP15_185 and HP15_186 overlap by 14 nucleotides
HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771
_183
HP15_184: HP15_184 - copper-binding protein, at 174,857 to 175,384
_184
HP15_185: HP15_185 - two component transcriptional regulator, winged helix family, at 175,588 to 176,253
_185
HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595
_186
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1 at 174.600 kb on - strand at 174.602 kb on + strand at 174.632 kb on + strand at 174.700 kb on + strand at 174.708 kb on - strand at 174.708 kb on - strand at 174.718 kb on + strand at 174.752 kb on + strand at 174.774 kb on + strand at 174.887 kb on + strand at 174.998 kb on + strand, within HP15_184 at 175.061 kb on + strand, within HP15_184 at 175.108 kb on - strand, within HP15_184 at 175.113 kb on - strand, within HP15_184 at 175.120 kb on + strand, within HP15_184 at 175.171 kb on - strand, within HP15_184 at 175.203 kb on - strand, within HP15_184 at 175.216 kb on + strand, within HP15_184 at 175.229 kb on + strand, within HP15_184 at 175.253 kb on - strand, within HP15_184 at 175.277 kb on - strand, within HP15_184 at 175.440 kb on - strand at 175.558 kb on - strand at 175.581 kb on - strand at 175.664 kb on + strand, within HP15_185 at 175.677 kb on - strand, within HP15_185 at 175.716 kb on + strand, within HP15_185 at 175.763 kb on + strand, within HP15_185 at 175.771 kb on - strand, within HP15_185 at 175.848 kb on + strand, within HP15_185 at 175.857 kb on + strand, within HP15_185 at 175.857 kb on - strand, within HP15_185 at 175.865 kb on - strand, within HP15_185 at 175.881 kb on - strand, within HP15_185 at 175.920 kb on + strand, within HP15_185 at 175.960 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.043 kb on - strand, within HP15_185 at 176.123 kb on + strand, within HP15_185 at 176.265 kb on - strand at 176.348 kb on - strand at 176.435 kb on + strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.720 kb on - strand, within HP15_186 at 176.764 kb on - strand, within HP15_186 at 176.787 kb on + strand, within HP15_186 at 177.136 kb on - strand, within HP15_186 at 177.178 kb on + strand, within HP15_186 at 177.221 kb on - strand, within HP15_186 at 177.235 kb on + strand, within HP15_186
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 174,600 - +0.2 174,602 + +0.2 174,632 + +0.3 174,700 + +0.4 174,708 - -0.9 174,708 - -0.2 174,718 + -0.4 174,752 + +0.1 174,774 + -0.5 174,887 + +0.0 174,998 + HP15_184 0.27 -0.1 175,061 + HP15_184 0.39 +0.3 175,108 - HP15_184 0.48 -0.4 175,113 - HP15_184 0.48 +0.2 175,120 + HP15_184 0.50 +0.0 175,171 - HP15_184 0.59 +0.8 175,203 - HP15_184 0.66 -0.4 175,216 + HP15_184 0.68 +0.8 175,229 + HP15_184 0.70 +0.0 175,253 - HP15_184 0.75 +0.2 175,277 - HP15_184 0.80 +0.0 175,440 - -0.2 175,558 - -0.2 175,581 - -0.1 175,664 + HP15_185 0.11 +0.0 175,677 - HP15_185 0.13 +0.0 175,716 + HP15_185 0.19 +0.0 175,763 + HP15_185 0.26 +0.3 175,771 - HP15_185 0.27 +0.3 175,848 + HP15_185 0.39 +0.4 175,857 + HP15_185 0.40 -0.1 175,857 - HP15_185 0.40 -0.2 175,865 - HP15_185 0.42 +0.3 175,881 - HP15_185 0.44 +0.3 175,920 + HP15_185 0.50 +0.7 175,960 - HP15_185 0.56 -0.2 176,037 - HP15_185 0.67 +0.3 176,037 - HP15_185 0.67 -0.1 176,037 - HP15_185 0.67 +0.0 176,043 - HP15_185 0.68 -0.6 176,123 + HP15_185 0.80 -0.4 176,265 - +0.3 176,348 - -0.2 176,435 + HP15_186 0.14 -0.6 176,443 - HP15_186 0.15 +0.4 176,443 - HP15_186 0.15 +0.3 176,443 - HP15_186 0.15 -0.5 176,720 - HP15_186 0.35 +0.0 176,764 - HP15_186 0.39 -0.6 176,787 + HP15_186 0.40 -0.1 177,136 - HP15_186 0.66 -1.0 177,178 + HP15_186 0.69 -1.0 177,221 - HP15_186 0.72 +0.0 177,235 + HP15_186 0.73 -0.2
Or see this region's nucleotide sequence