Strain Fitness in Marinobacter adhaerens HP15 around HP15_1555

Experiment: m.b. Nalidixic 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1553 and HP15_1554 are separated by 66 nucleotidesHP15_1554 and HP15_tRNA30 are separated by 205 nucleotidesHP15_tRNA30 and HP15_1555 are separated by 77 nucleotidesHP15_1555 and HP15_1556 are separated by 28 nucleotidesHP15_1556 and HP15_1557 overlap by 4 nucleotidesHP15_1557 and HP15_1558 are separated by 85 nucleotides HP15_1553: HP15_1553 - transcription negative regulator, at 1,635,277 to 1,635,936 _1553 HP15_1554: HP15_1554 - hydrolase, isochorismatase family, at 1,636,003 to 1,636,533 _1554 HP15_tRNA30: HP15_tRNA30 - tRNA-Ser, at 1,636,739 to 1,636,829 _tRNA30 HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509 _1555 HP15_1556: HP15_1556 - conserved hypothetical protein, at 1,637,538 to 1,638,131 _1556 HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403 _1557 HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262 _1558 Position (kb) 1636 1637 1638Strain fitness (log2 ratio) -1 0 1at 1635.943 kb on + strandat 1636.022 kb on - strandat 1636.091 kb on - strand, within HP15_1554at 1636.205 kb on - strand, within HP15_1554at 1636.380 kb on + strand, within HP15_1554at 1636.388 kb on - strand, within HP15_1554at 1636.441 kb on + strand, within HP15_1554at 1636.887 kb on - strandat 1637.040 kb on - strand, within HP15_1555at 1637.075 kb on + strand, within HP15_1555at 1637.124 kb on + strand, within HP15_1555at 1637.132 kb on - strand, within HP15_1555at 1637.260 kb on - strand, within HP15_1555at 1637.285 kb on - strand, within HP15_1555at 1637.365 kb on - strand, within HP15_1555at 1637.382 kb on - strand, within HP15_1555at 1637.384 kb on + strand, within HP15_1555at 1637.392 kb on - strand, within HP15_1555at 1637.581 kb on - strandat 1637.609 kb on - strand, within HP15_1556at 1637.715 kb on + strand, within HP15_1556at 1637.733 kb on - strand, within HP15_1556at 1637.806 kb on + strand, within HP15_1556at 1637.812 kb on - strand, within HP15_1556at 1637.887 kb on + strand, within HP15_1556at 1637.911 kb on + strand, within HP15_1556at 1637.916 kb on + strand, within HP15_1556at 1637.944 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.052 kb on + strand, within HP15_1556at 1638.106 kb on - strandat 1638.319 kb on - strand, within HP15_1557

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml
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1,635,943 + +0.3
1,636,022 - -1.4
1,636,091 - HP15_1554 0.17 -0.7
1,636,205 - HP15_1554 0.38 -0.7
1,636,380 + HP15_1554 0.71 +0.3
1,636,388 - HP15_1554 0.73 -0.9
1,636,441 + HP15_1554 0.82 +0.3
1,636,887 - -0.8
1,637,040 - HP15_1555 0.22 -0.0
1,637,075 + HP15_1555 0.28 +0.8
1,637,124 + HP15_1555 0.36 +0.3
1,637,132 - HP15_1555 0.37 +0.9
1,637,260 - HP15_1555 0.59 +0.4
1,637,285 - HP15_1555 0.63 -0.1
1,637,365 - HP15_1555 0.76 +0.5
1,637,382 - HP15_1555 0.79 +0.2
1,637,384 + HP15_1555 0.79 +0.1
1,637,392 - HP15_1555 0.80 +0.1
1,637,581 - -0.2
1,637,609 - HP15_1556 0.12 -0.1
1,637,715 + HP15_1556 0.30 +0.1
1,637,733 - HP15_1556 0.33 -0.1
1,637,806 + HP15_1556 0.45 +0.3
1,637,812 - HP15_1556 0.46 -0.1
1,637,887 + HP15_1556 0.59 -0.2
1,637,911 + HP15_1556 0.63 -0.9
1,637,916 + HP15_1556 0.64 +0.7
1,637,944 - HP15_1556 0.68 -0.8
1,638,050 - HP15_1556 0.86 +0.7
1,638,050 - HP15_1556 0.86 -0.5
1,638,052 + HP15_1556 0.87 +0.2
1,638,106 - -0.0
1,638,319 - HP15_1557 0.69 +0.5

Or see this region's nucleotide sequence