Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02302

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02300 and CCNA_02301 overlap by 4 nucleotidesCCNA_02301 and CCNA_02302 overlap by 4 nucleotidesCCNA_02302 and CCNA_02303 overlap by 4 nucleotidesCCNA_02303 and CCNA_02304 are separated by 28 nucleotides CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418 _02300 CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032 _02301 CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739 _02302 CCNA_02303: CCNA_02303 - cation transport protein chaC, at 2,448,736 to 2,449,281 _02303 CCNA_02304: CCNA_02304 - hypothetical protein, at 2,449,310 to 2,450,335 _02304 Position (kb) 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2at 2447.140 kb on + strand, within CCNA_02300at 2447.174 kb on + strand, within CCNA_02300at 2447.318 kb on - strand, within CCNA_02300at 2447.415 kb on + strandat 2447.457 kb on + strandat 2447.538 kb on - strand, within CCNA_02301at 2447.551 kb on + strand, within CCNA_02301at 2447.559 kb on - strand, within CCNA_02301at 2447.594 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.601 kb on + strand, within CCNA_02301at 2447.609 kb on - strand, within CCNA_02301at 2447.645 kb on + strand, within CCNA_02301at 2447.647 kb on - strand, within CCNA_02301at 2447.682 kb on + strand, within CCNA_02301at 2447.695 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.724 kb on + strand, within CCNA_02301at 2447.757 kb on + strand, within CCNA_02301at 2447.759 kb on - strand, within CCNA_02301at 2447.762 kb on + strand, within CCNA_02301at 2447.762 kb on + strand, within CCNA_02301at 2447.769 kb on + strand, within CCNA_02301at 2447.769 kb on + strand, within CCNA_02301at 2447.770 kb on - strand, within CCNA_02301at 2447.777 kb on - strand, within CCNA_02301at 2447.781 kb on - strand, within CCNA_02301at 2447.846 kb on - strand, within CCNA_02301at 2447.856 kb on - strand, within CCNA_02301at 2447.870 kb on + strand, within CCNA_02301at 2447.940 kb on - strand, within CCNA_02301at 2447.941 kb on + strand, within CCNA_02301at 2448.733 kb on + strandat 2448.741 kb on - strandat 2448.790 kb on - strandat 2448.797 kb on - strand, within CCNA_02303at 2448.797 kb on - strand, within CCNA_02303at 2448.859 kb on - strand, within CCNA_02303at 2449.029 kb on + strand, within CCNA_02303at 2449.042 kb on - strand, within CCNA_02303at 2449.042 kb on - strand, within CCNA_02303at 2449.090 kb on + strand, within CCNA_02303at 2449.110 kb on + strand, within CCNA_02303at 2449.110 kb on + strand, within CCNA_02303at 2449.118 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.133 kb on - strand, within CCNA_02303at 2449.185 kb on + strand, within CCNA_02303at 2449.188 kb on - strand, within CCNA_02303at 2449.269 kb on + strandat 2449.269 kb on + strandat 2449.269 kb on + strandat 2449.277 kb on - strandat 2449.302 kb on + strandat 2449.303 kb on + strandat 2449.303 kb on + strandat 2449.311 kb on - strandat 2449.315 kb on + strandat 2449.328 kb on + strandat 2449.408 kb on + strandat 2449.422 kb on - strand, within CCNA_02304at 2449.443 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.491 kb on + strand, within CCNA_02304at 2449.499 kb on - strand, within CCNA_02304at 2449.499 kb on - strand, within CCNA_02304at 2449.499 kb on - strand, within CCNA_02304at 2449.499 kb on - strand, within CCNA_02304at 2449.501 kb on + strand, within CCNA_02304at 2449.509 kb on - strand, within CCNA_02304at 2449.509 kb on - strand, within CCNA_02304at 2449.509 kb on - strand, within CCNA_02304at 2449.526 kb on - strand, within CCNA_02304at 2449.546 kb on + strand, within CCNA_02304at 2449.555 kb on - strand, within CCNA_02304at 2449.604 kb on + strand, within CCNA_02304at 2449.606 kb on + strand, within CCNA_02304at 2449.614 kb on - strand, within CCNA_02304at 2449.614 kb on - strand, within CCNA_02304at 2449.625 kb on + strand, within CCNA_02304at 2449.633 kb on - strand, within CCNA_02304at 2449.646 kb on + strand, within CCNA_02304at 2449.649 kb on - strand, within CCNA_02304at 2449.665 kb on + strand, within CCNA_02304at 2449.670 kb on + strand, within CCNA_02304at 2449.670 kb on + strand, within CCNA_02304at 2449.670 kb on + strand, within CCNA_02304at 2449.670 kb on + strand, within CCNA_02304at 2449.670 kb on + strand, within CCNA_02304at 2449.678 kb on - strand, within CCNA_02304at 2449.678 kb on - strand, within CCNA_02304at 2449.678 kb on - strand, within CCNA_02304at 2449.678 kb on - strand, within CCNA_02304at 2449.715 kb on + strand, within CCNA_02304at 2449.715 kb on + strand, within CCNA_02304

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
remove
2,447,140 + CCNA_02300 0.69 +0.8
2,447,174 + CCNA_02300 0.73 -1.6
2,447,318 - CCNA_02300 0.89 -1.3
2,447,415 + -0.4
2,447,457 + +0.1
2,447,538 - CCNA_02301 0.20 -0.6
2,447,551 + CCNA_02301 0.22 -0.7
2,447,559 - CCNA_02301 0.23 -0.9
2,447,594 + CCNA_02301 0.29 +0.2
2,447,601 + CCNA_02301 0.30 +0.2
2,447,601 + CCNA_02301 0.30 -0.2
2,447,601 + CCNA_02301 0.30 +0.1
2,447,609 - CCNA_02301 0.31 -0.9
2,447,645 + CCNA_02301 0.37 -0.2
2,447,647 - CCNA_02301 0.38 +0.2
2,447,682 + CCNA_02301 0.43 +0.2
2,447,695 + CCNA_02301 0.45 -0.1
2,447,700 + CCNA_02301 0.46 -0.4
2,447,700 + CCNA_02301 0.46 +0.0
2,447,724 + CCNA_02301 0.50 +0.1
2,447,757 + CCNA_02301 0.55 -0.0
2,447,759 - CCNA_02301 0.56 +0.9
2,447,762 + CCNA_02301 0.56 +0.5
2,447,762 + CCNA_02301 0.56 +0.1
2,447,769 + CCNA_02301 0.57 -1.2
2,447,769 + CCNA_02301 0.57 +0.0
2,447,770 - CCNA_02301 0.57 +0.8
2,447,777 - CCNA_02301 0.59 +0.2
2,447,781 - CCNA_02301 0.59 -0.4
2,447,846 - CCNA_02301 0.70 -1.2
2,447,856 - CCNA_02301 0.71 -0.3
2,447,870 + CCNA_02301 0.74 -0.5
2,447,940 - CCNA_02301 0.85 -1.1
2,447,941 + CCNA_02301 0.85 +0.1
2,448,733 + -0.2
2,448,741 - -0.3
2,448,790 - -0.2
2,448,797 - CCNA_02303 0.11 +0.4
2,448,797 - CCNA_02303 0.11 -0.3
2,448,859 - CCNA_02303 0.23 -0.3
2,449,029 + CCNA_02303 0.54 +0.6
2,449,042 - CCNA_02303 0.56 -0.2
2,449,042 - CCNA_02303 0.56 -0.8
2,449,090 + CCNA_02303 0.65 -0.3
2,449,110 + CCNA_02303 0.68 +0.3
2,449,110 + CCNA_02303 0.68 -0.4
2,449,118 - CCNA_02303 0.70 +0.2
2,449,133 - CCNA_02303 0.73 +0.1
2,449,133 - CCNA_02303 0.73 -0.4
2,449,133 - CCNA_02303 0.73 +0.1
2,449,133 - CCNA_02303 0.73 -0.4
2,449,133 - CCNA_02303 0.73 -0.3
2,449,133 - CCNA_02303 0.73 +1.4
2,449,133 - CCNA_02303 0.73 -0.2
2,449,133 - CCNA_02303 0.73 -0.4
2,449,133 - CCNA_02303 0.73 -0.4
2,449,133 - CCNA_02303 0.73 +0.0
2,449,133 - CCNA_02303 0.73 -0.3
2,449,133 - CCNA_02303 0.73 -1.6
2,449,185 + CCNA_02303 0.82 +0.1
2,449,188 - CCNA_02303 0.83 +0.4
2,449,269 + +0.7
2,449,269 + +0.5
2,449,269 + -0.2
2,449,277 - +1.8
2,449,302 + +0.1
2,449,303 + +0.3
2,449,303 + -0.1
2,449,311 - -0.2
2,449,315 + -0.6
2,449,328 + +1.1
2,449,408 + -0.3
2,449,422 - CCNA_02304 0.11 -1.7
2,449,443 + CCNA_02304 0.13 -0.8
2,449,491 + CCNA_02304 0.18 +0.1
2,449,491 + CCNA_02304 0.18 -0.3
2,449,491 + CCNA_02304 0.18 -0.0
2,449,491 + CCNA_02304 0.18 +0.1
2,449,491 + CCNA_02304 0.18 -0.8
2,449,491 + CCNA_02304 0.18 -1.0
2,449,491 + CCNA_02304 0.18 -0.1
2,449,499 - CCNA_02304 0.18 -0.5
2,449,499 - CCNA_02304 0.18 -1.1
2,449,499 - CCNA_02304 0.18 -1.6
2,449,499 - CCNA_02304 0.18 +0.4
2,449,501 + CCNA_02304 0.19 +2.4
2,449,509 - CCNA_02304 0.19 +0.5
2,449,509 - CCNA_02304 0.19 +1.6
2,449,509 - CCNA_02304 0.19 -0.8
2,449,526 - CCNA_02304 0.21 -1.4
2,449,546 + CCNA_02304 0.23 -0.5
2,449,555 - CCNA_02304 0.24 +0.4
2,449,604 + CCNA_02304 0.29 -1.2
2,449,606 + CCNA_02304 0.29 +0.7
2,449,614 - CCNA_02304 0.30 -0.1
2,449,614 - CCNA_02304 0.30 +0.0
2,449,625 + CCNA_02304 0.31 -0.0
2,449,633 - CCNA_02304 0.31 -1.1
2,449,646 + CCNA_02304 0.33 -0.8
2,449,649 - CCNA_02304 0.33 -0.9
2,449,665 + CCNA_02304 0.35 -0.1
2,449,670 + CCNA_02304 0.35 -0.7
2,449,670 + CCNA_02304 0.35 -0.4
2,449,670 + CCNA_02304 0.35 -1.9
2,449,670 + CCNA_02304 0.35 -0.3
2,449,670 + CCNA_02304 0.35 +0.5
2,449,678 - CCNA_02304 0.36 +0.1
2,449,678 - CCNA_02304 0.36 -2.5
2,449,678 - CCNA_02304 0.36 +0.9
2,449,678 - CCNA_02304 0.36 -0.8
2,449,715 + CCNA_02304 0.39 -0.4
2,449,715 + CCNA_02304 0.39 -0.8

Or see this region's nucleotide sequence