Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00974 and CCNA_00976 are separated by 446 nucleotides CCNA_00976 and CCNA_R0021 are separated by 173 nucleotides CCNA_R0021 and CCNA_R0022 are separated by 164 nucleotides CCNA_R0022 and CCNA_00977 are separated by 94 nucleotides
CCNA_00974: CCNA_00974 - OAR protein precursor, at 1,051,388 to 1,054,555
_00974
CCNA_00976: CCNA_00976 - signal peptide peptidase A, at 1,055,002 to 1,056,786
_00976
CCNA_R0021: CCNA_R0021 - tRNA-Pro, at 1,056,960 to 1,057,036
_R0021
CCNA_R0022: CCNA_R0022 - tRNA-Gln, at 1,057,201 to 1,057,274
_R0022
CCNA_00977: CCNA_00977 - transposase, IS4/5 family, at 1,057,369 to 1,057,779
_00977
Position (kb)
1055
1056
1057 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1054.008 kb on + strand, within CCNA_00974 at 1054.024 kb on - strand, within CCNA_00974 at 1054.046 kb on - strand, within CCNA_00974 at 1054.058 kb on - strand, within CCNA_00974 at 1054.058 kb on - strand, within CCNA_00974 at 1054.070 kb on + strand, within CCNA_00974 at 1054.071 kb on + strand, within CCNA_00974 at 1054.079 kb on - strand, within CCNA_00974 at 1054.079 kb on - strand, within CCNA_00974 at 1054.081 kb on + strand, within CCNA_00974 at 1054.086 kb on + strand, within CCNA_00974 at 1054.097 kb on - strand, within CCNA_00974 at 1054.189 kb on + strand, within CCNA_00974 at 1054.197 kb on + strand, within CCNA_00974 at 1054.197 kb on + strand, within CCNA_00974 at 1054.211 kb on + strand, within CCNA_00974 at 1054.213 kb on + strand, within CCNA_00974 at 1054.218 kb on - strand, within CCNA_00974 at 1054.268 kb on + strand at 1054.288 kb on + strand at 1054.288 kb on + strand at 1054.288 kb on + strand at 1054.311 kb on + strand at 1054.319 kb on - strand at 1054.352 kb on + strand at 1054.368 kb on + strand at 1054.386 kb on - strand at 1054.397 kb on - strand at 1054.401 kb on + strand at 1054.417 kb on - strand at 1054.472 kb on + strand at 1054.472 kb on + strand at 1054.480 kb on - strand at 1054.489 kb on + strand at 1054.543 kb on - strand at 1054.556 kb on + strand at 1054.585 kb on - strand at 1054.597 kb on - strand at 1054.597 kb on - strand at 1054.612 kb on - strand at 1054.626 kb on + strand at 1054.626 kb on + strand at 1054.632 kb on + strand at 1054.634 kb on - strand at 1054.640 kb on - strand at 1054.690 kb on - strand at 1054.719 kb on - strand at 1054.725 kb on - strand at 1054.731 kb on - strand at 1054.751 kb on + strand at 1054.751 kb on + strand at 1054.759 kb on - strand at 1054.771 kb on - strand at 1054.776 kb on + strand at 1054.794 kb on + strand at 1054.820 kb on + strand at 1054.827 kb on + strand at 1054.827 kb on - strand at 1054.828 kb on - strand at 1054.828 kb on - strand at 1054.835 kb on - strand at 1054.853 kb on - strand at 1054.867 kb on - strand at 1054.911 kb on + strand at 1054.981 kb on - strand at 1055.000 kb on + strand at 1055.046 kb on - strand at 1055.109 kb on - strand at 1055.225 kb on + strand, within CCNA_00976 at 1055.263 kb on - strand, within CCNA_00976 at 1055.401 kb on - strand, within CCNA_00976 at 1055.577 kb on - strand, within CCNA_00976 at 1056.032 kb on + strand, within CCNA_00976 at 1056.370 kb on + strand, within CCNA_00976 at 1056.486 kb on - strand, within CCNA_00976 at 1056.818 kb on - strand at 1056.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 1,054,008 + CCNA_00974 0.83 +0.3 1,054,024 - CCNA_00974 0.83 -1.7 1,054,046 - CCNA_00974 0.84 -0.2 1,054,058 - CCNA_00974 0.84 -0.7 1,054,058 - CCNA_00974 0.84 +0.1 1,054,070 + CCNA_00974 0.85 +0.9 1,054,071 + CCNA_00974 0.85 +0.0 1,054,079 - CCNA_00974 0.85 -0.2 1,054,079 - CCNA_00974 0.85 +1.4 1,054,081 + CCNA_00974 0.85 +0.4 1,054,086 + CCNA_00974 0.85 -0.2 1,054,097 - CCNA_00974 0.86 +0.4 1,054,189 + CCNA_00974 0.88 +1.0 1,054,197 + CCNA_00974 0.89 +0.1 1,054,197 + CCNA_00974 0.89 +0.3 1,054,211 + CCNA_00974 0.89 +0.1 1,054,213 + CCNA_00974 0.89 +0.5 1,054,218 - CCNA_00974 0.89 +0.4 1,054,268 + +0.6 1,054,288 + +0.8 1,054,288 + +0.5 1,054,288 + +0.4 1,054,311 + +0.6 1,054,319 - +0.3 1,054,352 + +0.3 1,054,368 + +0.3 1,054,386 - +0.8 1,054,397 - -0.1 1,054,401 + -0.0 1,054,417 - -1.3 1,054,472 + +0.3 1,054,472 + +0.1 1,054,480 - +1.2 1,054,489 + +0.6 1,054,543 - +0.8 1,054,556 + +0.2 1,054,585 - -0.3 1,054,597 - -0.6 1,054,597 - -0.2 1,054,612 - +0.3 1,054,626 + +0.2 1,054,626 + +0.3 1,054,632 + +1.0 1,054,634 - +0.1 1,054,640 - +0.5 1,054,690 - +0.4 1,054,719 - +0.1 1,054,725 - -0.2 1,054,731 - +0.3 1,054,751 + +0.2 1,054,751 + +0.4 1,054,759 - +0.9 1,054,771 - -0.1 1,054,776 + +0.3 1,054,794 + +0.8 1,054,820 + -0.3 1,054,827 + +0.8 1,054,827 - +0.5 1,054,828 - +0.5 1,054,828 - -0.3 1,054,835 - -0.5 1,054,853 - +0.2 1,054,867 - +0.6 1,054,911 + +0.9 1,054,981 - +0.3 1,055,000 + +0.4 1,055,046 - -0.9 1,055,109 - -1.0 1,055,225 + CCNA_00976 0.12 -1.7 1,055,263 - CCNA_00976 0.15 -0.9 1,055,401 - CCNA_00976 0.22 -1.0 1,055,577 - CCNA_00976 0.32 -1.9 1,056,032 + CCNA_00976 0.58 +1.4 1,056,370 + CCNA_00976 0.77 +0.8 1,056,486 - CCNA_00976 0.83 -0.9 1,056,818 - -0.6 1,056,833 - -3.6
Or see this region's nucleotide sequence