Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00976

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00974 and CCNA_00976 are separated by 446 nucleotidesCCNA_00976 and CCNA_R0021 are separated by 173 nucleotidesCCNA_R0021 and CCNA_R0022 are separated by 164 nucleotidesCCNA_R0022 and CCNA_00977 are separated by 94 nucleotides CCNA_00974: CCNA_00974 - OAR protein precursor, at 1,051,388 to 1,054,555 _00974 CCNA_00976: CCNA_00976 - signal peptide peptidase A, at 1,055,002 to 1,056,786 _00976 CCNA_R0021: CCNA_R0021 - tRNA-Pro, at 1,056,960 to 1,057,036 _R0021 CCNA_R0022: CCNA_R0022 - tRNA-Gln, at 1,057,201 to 1,057,274 _R0022 CCNA_00977: CCNA_00977 - transposase, IS4/5 family, at 1,057,369 to 1,057,779 _00977 Position (kb) 1055 1056 1057Strain fitness (log2 ratio) -3 -2 -1 0 1at 1054.008 kb on + strand, within CCNA_00974at 1054.024 kb on - strand, within CCNA_00974at 1054.046 kb on - strand, within CCNA_00974at 1054.058 kb on - strand, within CCNA_00974at 1054.058 kb on - strand, within CCNA_00974at 1054.070 kb on + strand, within CCNA_00974at 1054.071 kb on + strand, within CCNA_00974at 1054.079 kb on - strand, within CCNA_00974at 1054.079 kb on - strand, within CCNA_00974at 1054.081 kb on + strand, within CCNA_00974at 1054.086 kb on + strand, within CCNA_00974at 1054.097 kb on - strand, within CCNA_00974at 1054.189 kb on + strand, within CCNA_00974at 1054.197 kb on + strand, within CCNA_00974at 1054.197 kb on + strand, within CCNA_00974at 1054.211 kb on + strand, within CCNA_00974at 1054.213 kb on + strand, within CCNA_00974at 1054.218 kb on - strand, within CCNA_00974at 1054.268 kb on + strandat 1054.288 kb on + strandat 1054.288 kb on + strandat 1054.288 kb on + strandat 1054.311 kb on + strandat 1054.319 kb on - strandat 1054.352 kb on + strandat 1054.368 kb on + strandat 1054.386 kb on - strandat 1054.397 kb on - strandat 1054.401 kb on + strandat 1054.417 kb on - strandat 1054.472 kb on + strandat 1054.472 kb on + strandat 1054.480 kb on - strandat 1054.489 kb on + strandat 1054.543 kb on - strandat 1054.556 kb on + strandat 1054.585 kb on - strandat 1054.597 kb on - strandat 1054.597 kb on - strandat 1054.612 kb on - strandat 1054.626 kb on + strandat 1054.626 kb on + strandat 1054.632 kb on + strandat 1054.634 kb on - strandat 1054.640 kb on - strandat 1054.690 kb on - strandat 1054.719 kb on - strandat 1054.725 kb on - strandat 1054.731 kb on - strandat 1054.751 kb on + strandat 1054.751 kb on + strandat 1054.759 kb on - strandat 1054.771 kb on - strandat 1054.776 kb on + strandat 1054.794 kb on + strandat 1054.820 kb on + strandat 1054.827 kb on + strandat 1054.827 kb on - strandat 1054.828 kb on - strandat 1054.828 kb on - strandat 1054.835 kb on - strandat 1054.853 kb on - strandat 1054.867 kb on - strandat 1054.911 kb on + strandat 1054.981 kb on - strandat 1055.000 kb on + strandat 1055.046 kb on - strandat 1055.109 kb on - strandat 1055.225 kb on + strand, within CCNA_00976at 1055.263 kb on - strand, within CCNA_00976at 1055.401 kb on - strand, within CCNA_00976at 1055.577 kb on - strand, within CCNA_00976at 1056.032 kb on + strand, within CCNA_00976at 1056.370 kb on + strand, within CCNA_00976at 1056.486 kb on - strand, within CCNA_00976at 1056.818 kb on - strandat 1056.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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1,054,008 + CCNA_00974 0.83 +0.3
1,054,024 - CCNA_00974 0.83 -1.7
1,054,046 - CCNA_00974 0.84 -0.2
1,054,058 - CCNA_00974 0.84 -0.7
1,054,058 - CCNA_00974 0.84 +0.1
1,054,070 + CCNA_00974 0.85 +0.9
1,054,071 + CCNA_00974 0.85 +0.0
1,054,079 - CCNA_00974 0.85 -0.2
1,054,079 - CCNA_00974 0.85 +1.4
1,054,081 + CCNA_00974 0.85 +0.4
1,054,086 + CCNA_00974 0.85 -0.2
1,054,097 - CCNA_00974 0.86 +0.4
1,054,189 + CCNA_00974 0.88 +1.0
1,054,197 + CCNA_00974 0.89 +0.1
1,054,197 + CCNA_00974 0.89 +0.3
1,054,211 + CCNA_00974 0.89 +0.1
1,054,213 + CCNA_00974 0.89 +0.5
1,054,218 - CCNA_00974 0.89 +0.4
1,054,268 + +0.6
1,054,288 + +0.8
1,054,288 + +0.5
1,054,288 + +0.4
1,054,311 + +0.6
1,054,319 - +0.3
1,054,352 + +0.3
1,054,368 + +0.3
1,054,386 - +0.8
1,054,397 - -0.1
1,054,401 + -0.0
1,054,417 - -1.3
1,054,472 + +0.3
1,054,472 + +0.1
1,054,480 - +1.2
1,054,489 + +0.6
1,054,543 - +0.8
1,054,556 + +0.2
1,054,585 - -0.3
1,054,597 - -0.6
1,054,597 - -0.2
1,054,612 - +0.3
1,054,626 + +0.2
1,054,626 + +0.3
1,054,632 + +1.0
1,054,634 - +0.1
1,054,640 - +0.5
1,054,690 - +0.4
1,054,719 - +0.1
1,054,725 - -0.2
1,054,731 - +0.3
1,054,751 + +0.2
1,054,751 + +0.4
1,054,759 - +0.9
1,054,771 - -0.1
1,054,776 + +0.3
1,054,794 + +0.8
1,054,820 + -0.3
1,054,827 + +0.8
1,054,827 - +0.5
1,054,828 - +0.5
1,054,828 - -0.3
1,054,835 - -0.5
1,054,853 - +0.2
1,054,867 - +0.6
1,054,911 + +0.9
1,054,981 - +0.3
1,055,000 + +0.4
1,055,046 - -0.9
1,055,109 - -1.0
1,055,225 + CCNA_00976 0.12 -1.7
1,055,263 - CCNA_00976 0.15 -0.9
1,055,401 - CCNA_00976 0.22 -1.0
1,055,577 - CCNA_00976 0.32 -1.9
1,056,032 + CCNA_00976 0.58 +1.4
1,056,370 + CCNA_00976 0.77 +0.8
1,056,486 - CCNA_00976 0.83 -0.9
1,056,818 - -0.6
1,056,833 - -3.6

Or see this region's nucleotide sequence