Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00411

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00408 and CCNA_00409 are separated by 97 nucleotidesCCNA_00409 and CCNA_00410 are separated by 62 nucleotidesCCNA_00410 and CCNA_00411 are separated by 32 nucleotidesCCNA_00411 and CCNA_00412 overlap by 4 nucleotidesCCNA_00412 and CCNA_00413 are separated by 92 nucleotides CCNA_00408: CCNA_00408 - antiporter protein, at 423,040 to 424,308 _00408 CCNA_00409: CCNA_00409 - hypothetical protein, at 424,406 to 424,450 _00409 CCNA_00410: CCNA_00410 - acetyltransferase, at 424,513 to 425,043 _00410 CCNA_00411: CCNA_00411 - hypothetical protein, at 425,076 to 425,639 _00411 CCNA_00412: CCNA_00412 - CoA pyrophosphatase, at 425,636 to 426,286 _00412 CCNA_00413: CCNA_00413 - poly(A) polymerase/tRNA-nucleotidyltransferase, at 426,379 to 427,632 _00413 Position (kb) 425 426Strain fitness (log2 ratio) -2 -1 0 1 2at 424.076 kb on + strand, within CCNA_00408at 424.092 kb on + strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.168 kb on - strand, within CCNA_00408at 424.199 kb on - strandat 424.205 kb on - strandat 424.205 kb on - strandat 424.205 kb on - strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.222 kb on + strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.230 kb on - strandat 424.230 kb on - strandat 424.264 kb on + strandat 424.342 kb on - strandat 424.346 kb on + strandat 424.363 kb on + strandat 424.365 kb on - strandat 424.368 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.371 kb on - strandat 424.377 kb on - strandat 424.377 kb on - strandat 424.377 kb on - strandat 424.404 kb on - strandat 424.445 kb on + strand, within CCNA_00409at 424.452 kb on + strandat 424.465 kb on + strandat 424.473 kb on - strandat 424.473 kb on - strandat 424.481 kb on + strandat 424.489 kb on + strandat 424.530 kb on - strandat 424.728 kb on + strand, within CCNA_00410at 424.795 kb on - strand, within CCNA_00410at 424.999 kb on + strandat 425.010 kb on + strandat 425.024 kb on + strandat 425.032 kb on - strandat 425.066 kb on + strandat 425.073 kb on + strandat 425.081 kb on - strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.096 kb on - strandat 425.096 kb on - strandat 425.100 kb on + strandat 425.100 kb on + strandat 425.100 kb on + strandat 425.103 kb on - strandat 425.110 kb on + strandat 425.120 kb on + strandat 425.140 kb on + strand, within CCNA_00411at 425.165 kb on - strand, within CCNA_00411at 425.221 kb on + strand, within CCNA_00411at 425.248 kb on - strand, within CCNA_00411at 425.299 kb on + strand, within CCNA_00411at 425.299 kb on + strand, within CCNA_00411at 425.307 kb on - strand, within CCNA_00411at 425.314 kb on - strand, within CCNA_00411at 425.335 kb on - strand, within CCNA_00411at 425.354 kb on + strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.367 kb on + strand, within CCNA_00411at 425.377 kb on + strand, within CCNA_00411at 425.465 kb on + strand, within CCNA_00411at 425.505 kb on + strand, within CCNA_00411at 425.536 kb on + strand, within CCNA_00411at 425.536 kb on + strand, within CCNA_00411at 425.559 kb on + strand, within CCNA_00411at 425.628 kb on + strandat 425.628 kb on + strandat 425.628 kb on + strandat 425.629 kb on - strandat 425.633 kb on + strandat 425.636 kb on - strandat 425.719 kb on + strand, within CCNA_00412at 425.800 kb on + strand, within CCNA_00412at 425.800 kb on + strand, within CCNA_00412at 425.811 kb on + strand, within CCNA_00412at 425.836 kb on - strand, within CCNA_00412at 425.849 kb on + strand, within CCNA_00412at 425.865 kb on - strand, within CCNA_00412at 425.900 kb on - strand, within CCNA_00412at 425.920 kb on - strand, within CCNA_00412at 425.920 kb on - strand, within CCNA_00412at 425.924 kb on + strand, within CCNA_00412at 425.924 kb on + strand, within CCNA_00412at 425.932 kb on - strand, within CCNA_00412at 425.960 kb on - strand, within CCNA_00412at 425.968 kb on + strand, within CCNA_00412at 425.987 kb on + strand, within CCNA_00412at 426.012 kb on + strand, within CCNA_00412at 426.057 kb on + strand, within CCNA_00412at 426.064 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.069 kb on + strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.077 kb on - strand, within CCNA_00412at 426.119 kb on + strand, within CCNA_00412at 426.137 kb on + strand, within CCNA_00412at 426.195 kb on + strand, within CCNA_00412at 426.213 kb on - strand, within CCNA_00412at 426.241 kb on + strandat 426.241 kb on + strandat 426.271 kb on + strandat 426.276 kb on + strandat 426.276 kb on + strandat 426.276 kb on + strandat 426.276 kb on + strandat 426.284 kb on - strandat 426.284 kb on - strandat 426.318 kb on - strandat 426.321 kb on - strandat 426.329 kb on + strandat 426.344 kb on - strandat 426.345 kb on - strandat 426.376 kb on + strandat 426.384 kb on - strandat 426.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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424,076 + CCNA_00408 0.82 +1.0
424,092 + CCNA_00408 0.83 +0.6
424,159 - CCNA_00408 0.88 -0.9
424,159 - CCNA_00408 0.88 +1.2
424,159 - CCNA_00408 0.88 -0.2
424,168 - CCNA_00408 0.89 -0.4
424,199 - -0.2
424,205 - -0.3
424,205 - -0.3
424,205 - -0.8
424,217 + +0.1
424,217 + -0.4
424,217 + -0.3
424,217 + +0.4
424,217 + -0.4
424,217 + +0.3
424,217 + -0.4
424,222 + -0.5
424,225 - -0.1
424,225 - +1.1
424,225 - +0.4
424,225 - -0.5
424,230 - +0.8
424,230 - -0.7
424,264 + +1.1
424,342 - +0.1
424,346 + -0.6
424,363 + +0.4
424,365 - -0.6
424,368 + +0.5
424,369 + +0.4
424,369 + +0.1
424,369 + +0.1
424,369 + +0.4
424,369 + +0.3
424,369 + +0.3
424,371 - -0.7
424,377 - -1.1
424,377 - +1.5
424,377 - +0.2
424,404 - -0.8
424,445 + CCNA_00409 0.87 +0.4
424,452 + +1.1
424,465 + +1.5
424,473 - -0.9
424,473 - +0.0
424,481 + -0.0
424,489 + +0.1
424,530 - -0.0
424,728 + CCNA_00410 0.40 +1.0
424,795 - CCNA_00410 0.53 -1.7
424,999 + -2.5
425,010 + -0.4
425,024 + -0.5
425,032 - -0.5
425,066 + +0.4
425,073 + +1.9
425,081 - -0.9
425,088 + +0.1
425,088 + -1.5
425,088 + +0.1
425,088 + -0.6
425,088 + -0.2
425,088 + -0.4
425,090 + -0.8
425,090 + -0.1
425,090 + +0.4
425,090 + -0.4
425,096 - +0.3
425,096 - +1.2
425,100 + +0.3
425,100 + -0.2
425,100 + +0.3
425,103 - -1.6
425,110 + +0.3
425,120 + -0.6
425,140 + CCNA_00411 0.11 -0.1
425,165 - CCNA_00411 0.16 -1.4
425,221 + CCNA_00411 0.26 -0.1
425,248 - CCNA_00411 0.30 -0.9
425,299 + CCNA_00411 0.40 -1.4
425,299 + CCNA_00411 0.40 +0.5
425,307 - CCNA_00411 0.41 +0.1
425,314 - CCNA_00411 0.42 -0.4
425,335 - CCNA_00411 0.46 -0.3
425,354 + CCNA_00411 0.49 +0.3
425,362 - CCNA_00411 0.51 -0.7
425,362 - CCNA_00411 0.51 -0.3
425,362 - CCNA_00411 0.51 -1.1
425,367 + CCNA_00411 0.52 +0.1
425,377 + CCNA_00411 0.53 -0.4
425,465 + CCNA_00411 0.69 +0.7
425,505 + CCNA_00411 0.76 +0.3
425,536 + CCNA_00411 0.82 -0.3
425,536 + CCNA_00411 0.82 +0.3
425,559 + CCNA_00411 0.86 -0.1
425,628 + -0.1
425,628 + +0.5
425,628 + +0.1
425,629 - -0.3
425,633 + +0.3
425,636 - -1.2
425,719 + CCNA_00412 0.13 -0.5
425,800 + CCNA_00412 0.25 +0.5
425,800 + CCNA_00412 0.25 -0.8
425,811 + CCNA_00412 0.27 -0.1
425,836 - CCNA_00412 0.31 +0.1
425,849 + CCNA_00412 0.33 +0.4
425,865 - CCNA_00412 0.35 -1.8
425,900 - CCNA_00412 0.41 -1.1
425,920 - CCNA_00412 0.44 -1.2
425,920 - CCNA_00412 0.44 -0.1
425,924 + CCNA_00412 0.44 +0.1
425,924 + CCNA_00412 0.44 -0.1
425,932 - CCNA_00412 0.45 +0.2
425,960 - CCNA_00412 0.50 +0.1
425,968 + CCNA_00412 0.51 +0.1
425,987 + CCNA_00412 0.54 -0.3
426,012 + CCNA_00412 0.58 -0.1
426,057 + CCNA_00412 0.65 -0.0
426,064 + CCNA_00412 0.66 -0.3
426,069 + CCNA_00412 0.67 +0.0
426,069 + CCNA_00412 0.67 -1.3
426,069 + CCNA_00412 0.67 -0.7
426,069 + CCNA_00412 0.67 +0.4
426,069 + CCNA_00412 0.67 +0.6
426,069 + CCNA_00412 0.67 +0.4
426,077 - CCNA_00412 0.68 -0.6
426,077 - CCNA_00412 0.68 -0.4
426,077 - CCNA_00412 0.68 -0.7
426,077 - CCNA_00412 0.68 -0.5
426,077 - CCNA_00412 0.68 -1.7
426,077 - CCNA_00412 0.68 -0.4
426,077 - CCNA_00412 0.68 +0.2
426,119 + CCNA_00412 0.74 -0.1
426,137 + CCNA_00412 0.77 -0.2
426,195 + CCNA_00412 0.86 -0.0
426,213 - CCNA_00412 0.89 -1.1
426,241 + -0.9
426,241 + -0.1
426,271 + +0.9
426,276 + +1.5
426,276 + -0.6
426,276 + -0.2
426,276 + +0.1
426,284 - +0.1
426,284 - -0.1
426,318 - -0.5
426,321 - -0.3
426,329 + +0.8
426,344 - +0.5
426,345 - -0.8
426,376 + -1.6
426,384 - -0.8
426,391 - +1.2

Or see this region's nucleotide sequence