Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4777

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4776 and Pf6N2E2_4777 are separated by 62 nucleotidesPf6N2E2_4777 and Pf6N2E2_4778 are separated by 12 nucleotides Pf6N2E2_4776 - Coenzyme PQQ synthesis protein F, at 5,516,570 to 5,519,011 _4776 Pf6N2E2_4777 - 5-aminopentanamidase (EC 3.5.1.30) (from data), at 5,519,074 to 5,519,868 _4777 Pf6N2E2_4778 - Lysine 2-monooxygenase (EC 1.13.12.2) (from data), at 5,519,881 to 5,521,563 _4778 Position (kb) 5519 5520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5518.113 kb on + strand, within Pf6N2E2_4776at 5518.114 kb on - strand, within Pf6N2E2_4776at 5518.114 kb on - strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.201 kb on + strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.202 kb on - strand, within Pf6N2E2_4776at 5518.355 kb on + strand, within Pf6N2E2_4776at 5518.355 kb on + strand, within Pf6N2E2_4776at 5518.356 kb on - strand, within Pf6N2E2_4776at 5518.356 kb on - strand, within Pf6N2E2_4776at 5518.356 kb on - strand, within Pf6N2E2_4776at 5518.356 kb on - strand, within Pf6N2E2_4776at 5518.455 kb on + strand, within Pf6N2E2_4776at 5518.456 kb on - strand, within Pf6N2E2_4776at 5518.456 kb on - strand, within Pf6N2E2_4776at 5518.788 kb on + strandat 5518.788 kb on + strandat 5518.788 kb on + strandat 5518.789 kb on - strandat 5518.789 kb on - strandat 5518.789 kb on - strandat 5518.789 kb on - strandat 5518.789 kb on - strandat 5518.911 kb on - strandat 5519.051 kb on + strandat 5519.052 kb on - strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.123 kb on + strandat 5519.124 kb on - strandat 5519.124 kb on - strandat 5519.124 kb on - strandat 5519.124 kb on - strandat 5519.124 kb on - strandat 5519.129 kb on + strandat 5519.129 kb on + strandat 5519.130 kb on - strandat 5519.130 kb on - strandat 5519.276 kb on + strand, within Pf6N2E2_4777at 5519.285 kb on + strand, within Pf6N2E2_4777at 5519.286 kb on - strand, within Pf6N2E2_4777at 5519.348 kb on + strand, within Pf6N2E2_4777at 5519.348 kb on + strand, within Pf6N2E2_4777at 5519.349 kb on - strand, within Pf6N2E2_4777at 5519.349 kb on - strand, within Pf6N2E2_4777at 5519.435 kb on + strand, within Pf6N2E2_4777at 5519.436 kb on - strand, within Pf6N2E2_4777at 5519.546 kb on + strand, within Pf6N2E2_4777at 5519.546 kb on + strand, within Pf6N2E2_4777at 5519.594 kb on + strand, within Pf6N2E2_4777at 5519.595 kb on - strand, within Pf6N2E2_4777at 5519.595 kb on - strand, within Pf6N2E2_4777at 5519.595 kb on - strand, within Pf6N2E2_4777at 5519.630 kb on + strand, within Pf6N2E2_4777at 5519.630 kb on + strand, within Pf6N2E2_4777at 5519.630 kb on + strand, within Pf6N2E2_4777at 5519.631 kb on - strand, within Pf6N2E2_4777at 5519.631 kb on - strand, within Pf6N2E2_4777at 5519.694 kb on - strand, within Pf6N2E2_4777at 5519.694 kb on - strand, within Pf6N2E2_4777at 5519.707 kb on + strand, within Pf6N2E2_4777at 5519.707 kb on + strand, within Pf6N2E2_4777at 5519.735 kb on + strand, within Pf6N2E2_4777at 5519.852 kb on + strandat 5519.853 kb on - strandat 5519.860 kb on + strandat 5519.872 kb on + strandat 5519.872 kb on + strandat 5519.873 kb on - strandat 5519.873 kb on - strandat 5519.873 kb on - strandat 5519.873 kb on - strandat 5519.873 kb on - strandat 5519.873 kb on - strandat 5519.882 kb on + strandat 5519.882 kb on + strandat 5519.882 kb on + strandat 5519.883 kb on - strandat 5520.001 kb on + strandat 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.101 kb on + strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.102 kb on - strand, within Pf6N2E2_4778at 5520.116 kb on + strand, within Pf6N2E2_4778at 5520.231 kb on - strand, within Pf6N2E2_4778at 5520.317 kb on + strand, within Pf6N2E2_4778at 5520.317 kb on + strand, within Pf6N2E2_4778at 5520.365 kb on + strand, within Pf6N2E2_4778at 5520.365 kb on + strand, within Pf6N2E2_4778at 5520.365 kb on + strand, within Pf6N2E2_4778at 5520.365 kb on + strand, within Pf6N2E2_4778at 5520.365 kb on + strand, within Pf6N2E2_4778at 5520.366 kb on - strand, within Pf6N2E2_4778at 5520.366 kb on - strand, within Pf6N2E2_4778at 5520.485 kb on + strand, within Pf6N2E2_4778at 5520.486 kb on - strand, within Pf6N2E2_4778at 5520.486 kb on - strand, within Pf6N2E2_4778at 5520.594 kb on - strand, within Pf6N2E2_4778at 5520.594 kb on - strand, within Pf6N2E2_4778

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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5,518,113 + Pf6N2E2_4776 0.63 -0.2
5,518,114 - Pf6N2E2_4776 0.63 +0.0
5,518,114 - Pf6N2E2_4776 0.63 +1.0
5,518,201 + Pf6N2E2_4776 0.67 +1.1
5,518,201 + Pf6N2E2_4776 0.67 -1.8
5,518,201 + Pf6N2E2_4776 0.67 -0.7
5,518,201 + Pf6N2E2_4776 0.67 -0.6
5,518,201 + Pf6N2E2_4776 0.67 -0.2
5,518,201 + Pf6N2E2_4776 0.67 -1.2
5,518,202 - Pf6N2E2_4776 0.67 -0.4
5,518,202 - Pf6N2E2_4776 0.67 +0.0
5,518,202 - Pf6N2E2_4776 0.67 -1.1
5,518,202 - Pf6N2E2_4776 0.67 +0.5
5,518,202 - Pf6N2E2_4776 0.67 +0.2
5,518,202 - Pf6N2E2_4776 0.67 +0.4
5,518,202 - Pf6N2E2_4776 0.67 +0.9
5,518,202 - Pf6N2E2_4776 0.67 -1.4
5,518,202 - Pf6N2E2_4776 0.67 -0.5
5,518,355 + Pf6N2E2_4776 0.73 +0.0
5,518,355 + Pf6N2E2_4776 0.73 -1.4
5,518,356 - Pf6N2E2_4776 0.73 +0.1
5,518,356 - Pf6N2E2_4776 0.73 +0.1
5,518,356 - Pf6N2E2_4776 0.73 -0.0
5,518,356 - Pf6N2E2_4776 0.73 +0.3
5,518,455 + Pf6N2E2_4776 0.77 -0.8
5,518,456 - Pf6N2E2_4776 0.77 -1.7
5,518,456 - Pf6N2E2_4776 0.77 +0.0
5,518,788 + -0.3
5,518,788 + -0.0
5,518,788 + +0.9
5,518,789 - +1.1
5,518,789 - +0.3
5,518,789 - -1.3
5,518,789 - +1.7
5,518,789 - -1.1
5,518,911 - -0.4
5,519,051 + -0.5
5,519,052 - +0.9
5,519,123 + -2.6
5,519,123 + -2.4
5,519,123 + -1.2
5,519,123 + -3.4
5,519,123 + -1.1
5,519,123 + -2.5
5,519,123 + -1.6
5,519,124 - -2.6
5,519,124 - -2.7
5,519,124 - -1.4
5,519,124 - -2.1
5,519,124 - -2.9
5,519,129 + -3.9
5,519,129 + -3.5
5,519,130 - -2.9
5,519,130 - -1.6
5,519,276 + Pf6N2E2_4777 0.25 -3.4
5,519,285 + Pf6N2E2_4777 0.27 -2.5
5,519,286 - Pf6N2E2_4777 0.27 -3.1
5,519,348 + Pf6N2E2_4777 0.34 -3.0
5,519,348 + Pf6N2E2_4777 0.34 -1.8
5,519,349 - Pf6N2E2_4777 0.35 -3.3
5,519,349 - Pf6N2E2_4777 0.35 -3.1
5,519,435 + Pf6N2E2_4777 0.45 -2.7
5,519,436 - Pf6N2E2_4777 0.46 -2.5
5,519,546 + Pf6N2E2_4777 0.59 -2.5
5,519,546 + Pf6N2E2_4777 0.59 -1.4
5,519,594 + Pf6N2E2_4777 0.65 -1.5
5,519,595 - Pf6N2E2_4777 0.66 -2.3
5,519,595 - Pf6N2E2_4777 0.66 -1.8
5,519,595 - Pf6N2E2_4777 0.66 -1.7
5,519,630 + Pf6N2E2_4777 0.70 -2.2
5,519,630 + Pf6N2E2_4777 0.70 +0.3
5,519,630 + Pf6N2E2_4777 0.70 -0.9
5,519,631 - Pf6N2E2_4777 0.70 -2.4
5,519,631 - Pf6N2E2_4777 0.70 -2.9
5,519,694 - Pf6N2E2_4777 0.78 -2.3
5,519,694 - Pf6N2E2_4777 0.78 -2.4
5,519,707 + Pf6N2E2_4777 0.80 -1.8
5,519,707 + Pf6N2E2_4777 0.80 -2.7
5,519,735 + Pf6N2E2_4777 0.83 -2.9
5,519,852 + -1.8
5,519,853 - -3.4
5,519,860 + -1.7
5,519,872 + -2.2
5,519,872 + -1.1
5,519,873 - -1.2
5,519,873 - -2.2
5,519,873 - -2.6
5,519,873 - -2.8
5,519,873 - -1.4
5,519,873 - -2.8
5,519,882 + -0.9
5,519,882 + -3.0
5,519,882 + -2.9
5,519,883 - -0.9
5,520,001 + -1.9
5,520,101 + Pf6N2E2_4778 0.13 -2.6
5,520,101 + Pf6N2E2_4778 0.13 -3.2
5,520,101 + Pf6N2E2_4778 0.13 -3.4
5,520,101 + Pf6N2E2_4778 0.13 -2.6
5,520,101 + Pf6N2E2_4778 0.13 -2.4
5,520,101 + Pf6N2E2_4778 0.13 -1.1
5,520,101 + Pf6N2E2_4778 0.13 -3.3
5,520,101 + Pf6N2E2_4778 0.13 -2.0
5,520,101 + Pf6N2E2_4778 0.13 -3.0
5,520,101 + Pf6N2E2_4778 0.13 -0.3
5,520,102 - Pf6N2E2_4778 0.13 -1.1
5,520,102 - Pf6N2E2_4778 0.13 -0.8
5,520,102 - Pf6N2E2_4778 0.13 -3.2
5,520,102 - Pf6N2E2_4778 0.13 -3.1
5,520,102 - Pf6N2E2_4778 0.13 -0.7
5,520,102 - Pf6N2E2_4778 0.13 -2.1
5,520,102 - Pf6N2E2_4778 0.13 -2.2
5,520,102 - Pf6N2E2_4778 0.13 -3.3
5,520,102 - Pf6N2E2_4778 0.13 -1.4
5,520,102 - Pf6N2E2_4778 0.13 -0.9
5,520,102 - Pf6N2E2_4778 0.13 -2.6
5,520,102 - Pf6N2E2_4778 0.13 -1.7
5,520,116 + Pf6N2E2_4778 0.14 -3.5
5,520,231 - Pf6N2E2_4778 0.21 -3.2
5,520,317 + Pf6N2E2_4778 0.26 -1.3
5,520,317 + Pf6N2E2_4778 0.26 -0.4
5,520,365 + Pf6N2E2_4778 0.29 -2.3
5,520,365 + Pf6N2E2_4778 0.29 -2.3
5,520,365 + Pf6N2E2_4778 0.29 -3.7
5,520,365 + Pf6N2E2_4778 0.29 -2.5
5,520,365 + Pf6N2E2_4778 0.29 -1.9
5,520,366 - Pf6N2E2_4778 0.29 -2.5
5,520,366 - Pf6N2E2_4778 0.29 -3.0
5,520,485 + Pf6N2E2_4778 0.36 -3.1
5,520,486 - Pf6N2E2_4778 0.36 -2.5
5,520,486 - Pf6N2E2_4778 0.36 -2.2
5,520,594 - Pf6N2E2_4778 0.42 -3.3
5,520,594 - Pf6N2E2_4778 0.42 -3.8

Or see this region's nucleotide sequence