Experiment: Growth in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02301 and CCNA_02302 overlap by 4 nucleotides CCNA_02302 and CCNA_02303 overlap by 4 nucleotides CCNA_02303 and CCNA_02304 are separated by 28 nucleotides
CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032
_02301
CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739
_02302
CCNA_02303: CCNA_02303 - cation transport protein chaC, at 2,448,736 to 2,449,281
_02303
CCNA_02304: CCNA_02304 - hypothetical protein, at 2,449,310 to 2,450,335
_02304
Position (kb)
2448
2449
2450 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2447.757 kb on + strand, within CCNA_02301 at 2447.759 kb on - strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.770 kb on - strand, within CCNA_02301 at 2447.777 kb on - strand, within CCNA_02301 at 2447.781 kb on - strand, within CCNA_02301 at 2447.846 kb on - strand, within CCNA_02301 at 2447.856 kb on - strand, within CCNA_02301 at 2447.870 kb on + strand, within CCNA_02301 at 2447.940 kb on - strand, within CCNA_02301 at 2447.941 kb on + strand, within CCNA_02301 at 2448.733 kb on + strand at 2448.741 kb on - strand at 2448.790 kb on - strand at 2448.797 kb on - strand, within CCNA_02303 at 2448.797 kb on - strand, within CCNA_02303 at 2448.859 kb on - strand, within CCNA_02303 at 2449.029 kb on + strand, within CCNA_02303 at 2449.042 kb on - strand, within CCNA_02303 at 2449.042 kb on - strand, within CCNA_02303 at 2449.090 kb on + strand, within CCNA_02303 at 2449.110 kb on + strand, within CCNA_02303 at 2449.110 kb on + strand, within CCNA_02303 at 2449.118 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.185 kb on + strand, within CCNA_02303 at 2449.188 kb on - strand, within CCNA_02303 at 2449.269 kb on + strand at 2449.269 kb on + strand at 2449.269 kb on + strand at 2449.277 kb on - strand at 2449.302 kb on + strand at 2449.303 kb on + strand at 2449.303 kb on + strand at 2449.311 kb on - strand at 2449.315 kb on + strand at 2449.328 kb on + strand at 2449.408 kb on + strand at 2449.422 kb on - strand, within CCNA_02304 at 2449.443 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.501 kb on + strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.526 kb on - strand, within CCNA_02304 at 2449.546 kb on + strand, within CCNA_02304 at 2449.555 kb on - strand, within CCNA_02304 at 2449.604 kb on + strand, within CCNA_02304 at 2449.606 kb on + strand, within CCNA_02304 at 2449.614 kb on - strand, within CCNA_02304 at 2449.614 kb on - strand, within CCNA_02304 at 2449.625 kb on + strand, within CCNA_02304 at 2449.633 kb on - strand, within CCNA_02304 at 2449.646 kb on + strand, within CCNA_02304 at 2449.649 kb on - strand, within CCNA_02304 at 2449.665 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.715 kb on + strand, within CCNA_02304 at 2449.715 kb on + strand, within CCNA_02304 at 2449.804 kb on + strand, within CCNA_02304 at 2449.804 kb on + strand, within CCNA_02304 at 2449.811 kb on + strand, within CCNA_02304 at 2449.818 kb on + strand, within CCNA_02304 at 2449.822 kb on + strand, within CCNA_02304 at 2449.830 kb on - strand, within CCNA_02304 at 2449.830 kb on - strand, within CCNA_02304 at 2449.830 kb on - strand, within CCNA_02304 at 2449.847 kb on + strand, within CCNA_02304 at 2449.888 kb on + strand, within CCNA_02304 at 2449.891 kb on - strand, within CCNA_02304 at 2449.896 kb on - strand, within CCNA_02304 at 2449.903 kb on + strand, within CCNA_02304 at 2449.903 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.940 kb on + strand, within CCNA_02304 at 2449.948 kb on - strand, within CCNA_02304 at 2449.948 kb on - strand, within CCNA_02304 at 2449.950 kb on + strand, within CCNA_02304 at 2449.953 kb on - strand, within CCNA_02304 at 2449.953 kb on - strand, within CCNA_02304 at 2449.976 kb on + strand, within CCNA_02304 at 2449.989 kb on - strand, within CCNA_02304 at 2450.048 kb on + strand, within CCNA_02304 at 2450.078 kb on - strand, within CCNA_02304 at 2450.101 kb on + strand, within CCNA_02304 at 2450.109 kb on - strand, within CCNA_02304 at 2450.109 kb on - strand, within CCNA_02304 at 2450.236 kb on - strand at 2450.241 kb on - strand at 2450.241 kb on - strand at 2450.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in M5G remove 2,447,757 + CCNA_02301 0.55 -0.1 2,447,759 - CCNA_02301 0.56 +0.6 2,447,762 + CCNA_02301 0.56 +0.6 2,447,762 + CCNA_02301 0.56 -0.5 2,447,769 + CCNA_02301 0.57 -0.3 2,447,769 + CCNA_02301 0.57 +0.4 2,447,770 - CCNA_02301 0.57 -0.8 2,447,777 - CCNA_02301 0.59 -0.2 2,447,781 - CCNA_02301 0.59 -1.0 2,447,846 - CCNA_02301 0.70 -0.8 2,447,856 - CCNA_02301 0.71 -0.3 2,447,870 + CCNA_02301 0.74 +0.4 2,447,940 - CCNA_02301 0.85 -1.2 2,447,941 + CCNA_02301 0.85 +1.0 2,448,733 + -0.3 2,448,741 - +0.4 2,448,790 - -0.2 2,448,797 - CCNA_02303 0.11 -0.6 2,448,797 - CCNA_02303 0.11 +0.4 2,448,859 - CCNA_02303 0.23 +0.2 2,449,029 + CCNA_02303 0.54 -0.4 2,449,042 - CCNA_02303 0.56 -0.4 2,449,042 - CCNA_02303 0.56 -0.8 2,449,090 + CCNA_02303 0.65 +0.8 2,449,110 + CCNA_02303 0.68 -0.0 2,449,110 + CCNA_02303 0.68 +0.8 2,449,118 - CCNA_02303 0.70 +0.5 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 +0.2 2,449,133 - CCNA_02303 0.73 -1.4 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 +0.4 2,449,133 - CCNA_02303 0.73 -0.7 2,449,133 - CCNA_02303 0.73 +0.4 2,449,133 - CCNA_02303 0.73 +0.3 2,449,133 - CCNA_02303 0.73 -0.8 2,449,133 - CCNA_02303 0.73 -0.3 2,449,133 - CCNA_02303 0.73 +0.0 2,449,185 + CCNA_02303 0.82 -1.0 2,449,188 - CCNA_02303 0.83 -0.0 2,449,269 + +0.7 2,449,269 + -0.2 2,449,269 + +0.3 2,449,277 - +1.8 2,449,302 + +0.0 2,449,303 + +0.3 2,449,303 + +0.4 2,449,311 - -0.3 2,449,315 + +0.4 2,449,328 + +0.8 2,449,408 + -0.1 2,449,422 - CCNA_02304 0.11 -0.1 2,449,443 + CCNA_02304 0.13 +0.5 2,449,491 + CCNA_02304 0.18 -1.0 2,449,491 + CCNA_02304 0.18 -2.3 2,449,491 + CCNA_02304 0.18 +0.3 2,449,491 + CCNA_02304 0.18 +0.1 2,449,491 + CCNA_02304 0.18 -0.5 2,449,491 + CCNA_02304 0.18 -1.0 2,449,491 + CCNA_02304 0.18 -0.3 2,449,499 - CCNA_02304 0.18 -0.5 2,449,499 - CCNA_02304 0.18 +1.2 2,449,499 - CCNA_02304 0.18 -1.6 2,449,499 - CCNA_02304 0.18 +1.4 2,449,501 + CCNA_02304 0.19 +2.4 2,449,509 - CCNA_02304 0.19 +0.0 2,449,509 - CCNA_02304 0.19 -1.0 2,449,509 - CCNA_02304 0.19 +0.8 2,449,526 - CCNA_02304 0.21 -0.8 2,449,546 + CCNA_02304 0.23 +0.3 2,449,555 - CCNA_02304 0.24 +0.7 2,449,604 + CCNA_02304 0.29 -0.9 2,449,606 + CCNA_02304 0.29 +0.7 2,449,614 - CCNA_02304 0.30 -1.4 2,449,614 - CCNA_02304 0.30 -0.8 2,449,625 + CCNA_02304 0.31 +0.3 2,449,633 - CCNA_02304 0.31 -0.5 2,449,646 + CCNA_02304 0.33 -0.7 2,449,649 - CCNA_02304 0.33 +0.2 2,449,665 + CCNA_02304 0.35 +0.2 2,449,670 + CCNA_02304 0.35 +0.4 2,449,670 + CCNA_02304 0.35 -0.4 2,449,670 + CCNA_02304 0.35 -0.4 2,449,670 + CCNA_02304 0.35 -0.7 2,449,670 + CCNA_02304 0.35 -0.8 2,449,678 - CCNA_02304 0.36 +0.0 2,449,678 - CCNA_02304 0.36 -0.5 2,449,678 - CCNA_02304 0.36 -0.4 2,449,678 - CCNA_02304 0.36 -0.8 2,449,715 + CCNA_02304 0.39 -0.0 2,449,715 + CCNA_02304 0.39 -0.1 2,449,804 + CCNA_02304 0.48 +0.7 2,449,804 + CCNA_02304 0.48 -0.8 2,449,811 + CCNA_02304 0.49 +0.3 2,449,818 + CCNA_02304 0.50 +0.2 2,449,822 + CCNA_02304 0.50 -0.3 2,449,830 - CCNA_02304 0.51 -0.8 2,449,830 - CCNA_02304 0.51 +0.3 2,449,830 - CCNA_02304 0.51 +0.1 2,449,847 + CCNA_02304 0.52 +0.1 2,449,888 + CCNA_02304 0.56 -0.0 2,449,891 - CCNA_02304 0.57 -0.1 2,449,896 - CCNA_02304 0.57 -1.1 2,449,903 + CCNA_02304 0.58 -0.7 2,449,903 + CCNA_02304 0.58 -0.2 2,449,940 + CCNA_02304 0.61 -0.5 2,449,940 + CCNA_02304 0.61 +0.2 2,449,940 + CCNA_02304 0.61 +0.0 2,449,940 + CCNA_02304 0.61 -0.7 2,449,940 + CCNA_02304 0.61 -0.4 2,449,940 + CCNA_02304 0.61 -0.1 2,449,940 + CCNA_02304 0.61 +0.2 2,449,948 - CCNA_02304 0.62 +0.4 2,449,948 - CCNA_02304 0.62 -1.9 2,449,950 + CCNA_02304 0.62 -0.0 2,449,953 - CCNA_02304 0.63 -0.1 2,449,953 - CCNA_02304 0.63 +0.2 2,449,976 + CCNA_02304 0.65 -0.1 2,449,989 - CCNA_02304 0.66 +0.1 2,450,048 + CCNA_02304 0.72 +1.6 2,450,078 - CCNA_02304 0.75 +0.2 2,450,101 + CCNA_02304 0.77 +1.5 2,450,109 - CCNA_02304 0.78 -0.3 2,450,109 - CCNA_02304 0.78 -0.6 2,450,236 - -0.4 2,450,241 - -0.7 2,450,241 - +0.4 2,450,241 - -0.4
Or see this region's nucleotide sequence