Experiment: Growth in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02300 and CCNA_02301 overlap by 4 nucleotides CCNA_02301 and CCNA_02302 overlap by 4 nucleotides CCNA_02302 and CCNA_02303 overlap by 4 nucleotides CCNA_02303 and CCNA_02304 are separated by 28 nucleotides
CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418
_02300
CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032
_02301
CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739
_02302
CCNA_02303: CCNA_02303 - cation transport protein chaC, at 2,448,736 to 2,449,281
_02303
CCNA_02304: CCNA_02304 - hypothetical protein, at 2,449,310 to 2,450,335
_02304
Position (kb)
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2447.140 kb on + strand, within CCNA_02300 at 2447.174 kb on + strand, within CCNA_02300 at 2447.318 kb on - strand, within CCNA_02300 at 2447.415 kb on + strand at 2447.457 kb on + strand at 2447.538 kb on - strand, within CCNA_02301 at 2447.551 kb on + strand, within CCNA_02301 at 2447.559 kb on - strand, within CCNA_02301 at 2447.594 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.601 kb on + strand, within CCNA_02301 at 2447.609 kb on - strand, within CCNA_02301 at 2447.645 kb on + strand, within CCNA_02301 at 2447.647 kb on - strand, within CCNA_02301 at 2447.682 kb on + strand, within CCNA_02301 at 2447.695 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.724 kb on + strand, within CCNA_02301 at 2447.757 kb on + strand, within CCNA_02301 at 2447.759 kb on - strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.769 kb on + strand, within CCNA_02301 at 2447.770 kb on - strand, within CCNA_02301 at 2447.777 kb on - strand, within CCNA_02301 at 2447.781 kb on - strand, within CCNA_02301 at 2447.846 kb on - strand, within CCNA_02301 at 2447.856 kb on - strand, within CCNA_02301 at 2447.870 kb on + strand, within CCNA_02301 at 2447.940 kb on - strand, within CCNA_02301 at 2447.941 kb on + strand, within CCNA_02301 at 2448.733 kb on + strand at 2448.741 kb on - strand at 2448.790 kb on - strand at 2448.797 kb on - strand, within CCNA_02303 at 2448.797 kb on - strand, within CCNA_02303 at 2448.859 kb on - strand, within CCNA_02303 at 2449.029 kb on + strand, within CCNA_02303 at 2449.042 kb on - strand, within CCNA_02303 at 2449.042 kb on - strand, within CCNA_02303 at 2449.090 kb on + strand, within CCNA_02303 at 2449.110 kb on + strand, within CCNA_02303 at 2449.110 kb on + strand, within CCNA_02303 at 2449.118 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.133 kb on - strand, within CCNA_02303 at 2449.185 kb on + strand, within CCNA_02303 at 2449.188 kb on - strand, within CCNA_02303 at 2449.269 kb on + strand at 2449.269 kb on + strand at 2449.269 kb on + strand at 2449.277 kb on - strand at 2449.302 kb on + strand at 2449.303 kb on + strand at 2449.303 kb on + strand at 2449.311 kb on - strand at 2449.315 kb on + strand at 2449.328 kb on + strand at 2449.408 kb on + strand at 2449.422 kb on - strand, within CCNA_02304 at 2449.443 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.491 kb on + strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.499 kb on - strand, within CCNA_02304 at 2449.501 kb on + strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.509 kb on - strand, within CCNA_02304 at 2449.526 kb on - strand, within CCNA_02304 at 2449.546 kb on + strand, within CCNA_02304 at 2449.555 kb on - strand, within CCNA_02304 at 2449.604 kb on + strand, within CCNA_02304 at 2449.606 kb on + strand, within CCNA_02304 at 2449.614 kb on - strand, within CCNA_02304 at 2449.614 kb on - strand, within CCNA_02304 at 2449.625 kb on + strand, within CCNA_02304 at 2449.633 kb on - strand, within CCNA_02304 at 2449.646 kb on + strand, within CCNA_02304 at 2449.649 kb on - strand, within CCNA_02304 at 2449.665 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.670 kb on + strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.678 kb on - strand, within CCNA_02304 at 2449.715 kb on + strand, within CCNA_02304 at 2449.715 kb on + strand, within CCNA_02304
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in M5G remove 2,447,140 + CCNA_02300 0.69 -0.8 2,447,174 + CCNA_02300 0.73 -1.6 2,447,318 - CCNA_02300 0.89 -0.3 2,447,415 + +0.0 2,447,457 + -0.3 2,447,538 - CCNA_02301 0.20 -0.6 2,447,551 + CCNA_02301 0.22 -0.4 2,447,559 - CCNA_02301 0.23 -0.3 2,447,594 + CCNA_02301 0.29 +0.6 2,447,601 + CCNA_02301 0.30 +0.6 2,447,601 + CCNA_02301 0.30 -0.2 2,447,601 + CCNA_02301 0.30 -0.1 2,447,609 - CCNA_02301 0.31 -0.3 2,447,645 + CCNA_02301 0.37 +0.4 2,447,647 - CCNA_02301 0.38 +0.2 2,447,682 + CCNA_02301 0.43 -0.0 2,447,695 + CCNA_02301 0.45 +0.1 2,447,700 + CCNA_02301 0.46 +0.1 2,447,700 + CCNA_02301 0.46 -0.2 2,447,724 + CCNA_02301 0.50 +0.4 2,447,757 + CCNA_02301 0.55 -0.1 2,447,759 - CCNA_02301 0.56 +0.6 2,447,762 + CCNA_02301 0.56 +0.6 2,447,762 + CCNA_02301 0.56 -0.5 2,447,769 + CCNA_02301 0.57 -0.3 2,447,769 + CCNA_02301 0.57 +0.4 2,447,770 - CCNA_02301 0.57 -0.8 2,447,777 - CCNA_02301 0.59 -0.2 2,447,781 - CCNA_02301 0.59 -1.0 2,447,846 - CCNA_02301 0.70 -0.8 2,447,856 - CCNA_02301 0.71 -0.3 2,447,870 + CCNA_02301 0.74 +0.4 2,447,940 - CCNA_02301 0.85 -1.2 2,447,941 + CCNA_02301 0.85 +1.0 2,448,733 + -0.3 2,448,741 - +0.4 2,448,790 - -0.2 2,448,797 - CCNA_02303 0.11 -0.6 2,448,797 - CCNA_02303 0.11 +0.4 2,448,859 - CCNA_02303 0.23 +0.2 2,449,029 + CCNA_02303 0.54 -0.4 2,449,042 - CCNA_02303 0.56 -0.4 2,449,042 - CCNA_02303 0.56 -0.8 2,449,090 + CCNA_02303 0.65 +0.8 2,449,110 + CCNA_02303 0.68 -0.0 2,449,110 + CCNA_02303 0.68 +0.8 2,449,118 - CCNA_02303 0.70 +0.5 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 +0.2 2,449,133 - CCNA_02303 0.73 -1.4 2,449,133 - CCNA_02303 0.73 -0.2 2,449,133 - CCNA_02303 0.73 +0.4 2,449,133 - CCNA_02303 0.73 -0.7 2,449,133 - CCNA_02303 0.73 +0.4 2,449,133 - CCNA_02303 0.73 +0.3 2,449,133 - CCNA_02303 0.73 -0.8 2,449,133 - CCNA_02303 0.73 -0.3 2,449,133 - CCNA_02303 0.73 +0.0 2,449,185 + CCNA_02303 0.82 -1.0 2,449,188 - CCNA_02303 0.83 -0.0 2,449,269 + +0.7 2,449,269 + -0.2 2,449,269 + +0.3 2,449,277 - +1.8 2,449,302 + +0.0 2,449,303 + +0.3 2,449,303 + +0.4 2,449,311 - -0.3 2,449,315 + +0.4 2,449,328 + +0.8 2,449,408 + -0.1 2,449,422 - CCNA_02304 0.11 -0.1 2,449,443 + CCNA_02304 0.13 +0.5 2,449,491 + CCNA_02304 0.18 -1.0 2,449,491 + CCNA_02304 0.18 -2.3 2,449,491 + CCNA_02304 0.18 +0.3 2,449,491 + CCNA_02304 0.18 +0.1 2,449,491 + CCNA_02304 0.18 -0.5 2,449,491 + CCNA_02304 0.18 -1.0 2,449,491 + CCNA_02304 0.18 -0.3 2,449,499 - CCNA_02304 0.18 -0.5 2,449,499 - CCNA_02304 0.18 +1.2 2,449,499 - CCNA_02304 0.18 -1.6 2,449,499 - CCNA_02304 0.18 +1.4 2,449,501 + CCNA_02304 0.19 +2.4 2,449,509 - CCNA_02304 0.19 +0.0 2,449,509 - CCNA_02304 0.19 -1.0 2,449,509 - CCNA_02304 0.19 +0.8 2,449,526 - CCNA_02304 0.21 -0.8 2,449,546 + CCNA_02304 0.23 +0.3 2,449,555 - CCNA_02304 0.24 +0.7 2,449,604 + CCNA_02304 0.29 -0.9 2,449,606 + CCNA_02304 0.29 +0.7 2,449,614 - CCNA_02304 0.30 -1.4 2,449,614 - CCNA_02304 0.30 -0.8 2,449,625 + CCNA_02304 0.31 +0.3 2,449,633 - CCNA_02304 0.31 -0.5 2,449,646 + CCNA_02304 0.33 -0.7 2,449,649 - CCNA_02304 0.33 +0.2 2,449,665 + CCNA_02304 0.35 +0.2 2,449,670 + CCNA_02304 0.35 +0.4 2,449,670 + CCNA_02304 0.35 -0.4 2,449,670 + CCNA_02304 0.35 -0.4 2,449,670 + CCNA_02304 0.35 -0.7 2,449,670 + CCNA_02304 0.35 -0.8 2,449,678 - CCNA_02304 0.36 +0.0 2,449,678 - CCNA_02304 0.36 -0.5 2,449,678 - CCNA_02304 0.36 -0.4 2,449,678 - CCNA_02304 0.36 -0.8 2,449,715 + CCNA_02304 0.39 -0.0 2,449,715 + CCNA_02304 0.39 -0.1
Or see this region's nucleotide sequence