Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_832 and Pf6N2E2_833 are separated by 383 nucleotides Pf6N2E2_833 and Pf6N2E2_834 overlap by 4 nucleotides
Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675
_832
Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003
_833
Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080
_834
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 971.082 kb on - strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.264 kb on - strand, within Pf6N2E2_832 at 971.360 kb on + strand, within Pf6N2E2_832 at 971.360 kb on + strand, within Pf6N2E2_832 at 971.361 kb on - strand, within Pf6N2E2_832 at 971.534 kb on + strand at 971.602 kb on + strand at 971.603 kb on - strand at 971.646 kb on + strand at 971.762 kb on + strand at 971.763 kb on - strand at 971.763 kb on - strand at 971.772 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 972.399 kb on - strand, within Pf6N2E2_833 at 972.649 kb on + strand, within Pf6N2E2_833 at 972.650 kb on - strand, within Pf6N2E2_833 at 972.665 kb on + strand, within Pf6N2E2_833 at 972.666 kb on - strand, within Pf6N2E2_833 at 972.776 kb on + strand, within Pf6N2E2_833 at 973.049 kb on + strand at 973.050 kb on - strand at 973.050 kb on - strand at 973.150 kb on - strand at 973.234 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.330 kb on + strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.409 kb on - strand, within Pf6N2E2_834 at 973.643 kb on + strand, within Pf6N2E2_834 at 973.644 kb on - strand, within Pf6N2E2_834
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 971,082 - Pf6N2E2_832 0.59 -0.1 971,116 + Pf6N2E2_832 0.62 +0.3 971,116 + Pf6N2E2_832 0.62 +0.6 971,116 + Pf6N2E2_832 0.62 +0.1 971,116 + Pf6N2E2_832 0.62 -1.5 971,116 + Pf6N2E2_832 0.62 -0.3 971,116 + Pf6N2E2_832 0.62 +1.2 971,116 + Pf6N2E2_832 0.62 -1.2 971,116 + Pf6N2E2_832 0.62 -0.8 971,116 + Pf6N2E2_832 0.62 -0.5 971,117 - Pf6N2E2_832 0.62 -0.8 971,117 - Pf6N2E2_832 0.62 +0.0 971,117 - Pf6N2E2_832 0.62 -0.4 971,117 - Pf6N2E2_832 0.62 +0.5 971,117 - Pf6N2E2_832 0.62 +0.8 971,117 - Pf6N2E2_832 0.62 -0.1 971,117 - Pf6N2E2_832 0.62 +0.3 971,117 - Pf6N2E2_832 0.62 +1.0 971,117 - Pf6N2E2_832 0.62 +0.6 971,117 - Pf6N2E2_832 0.62 -0.2 971,263 + Pf6N2E2_832 0.72 -0.2 971,263 + Pf6N2E2_832 0.72 +0.9 971,263 + Pf6N2E2_832 0.72 -0.4 971,263 + Pf6N2E2_832 0.72 -2.4 971,264 - Pf6N2E2_832 0.72 -0.7 971,360 + Pf6N2E2_832 0.78 -0.7 971,360 + Pf6N2E2_832 0.78 +0.5 971,361 - Pf6N2E2_832 0.78 -2.1 971,534 + -0.6 971,602 + -0.5 971,603 - -0.0 971,646 + -0.5 971,762 + -0.4 971,763 - -0.1 971,763 - -0.1 971,772 + -0.5 971,893 + -0.6 971,893 + +0.7 971,893 + -0.1 971,893 + +0.5 971,893 + -0.0 971,894 - -1.8 971,894 - +0.3 971,894 - +0.0 971,894 - -0.1 971,894 - -1.0 971,894 - +0.8 971,894 - -0.7 971,894 - +0.5 972,399 - Pf6N2E2_833 0.36 +1.1 972,649 + Pf6N2E2_833 0.62 -1.4 972,650 - Pf6N2E2_833 0.63 -0.8 972,665 + Pf6N2E2_833 0.64 +0.1 972,666 - Pf6N2E2_833 0.64 -3.2 972,776 + Pf6N2E2_833 0.76 -1.0 973,049 + +1.0 973,050 - -1.1 973,050 - -0.1 973,150 - -0.4 973,234 + +0.8 973,252 + -0.8 973,252 + +0.9 973,252 + +1.1 973,253 - +0.8 973,253 - +0.9 973,253 - +1.0 973,330 + Pf6N2E2_834 0.11 +1.6 973,331 - Pf6N2E2_834 0.11 -0.1 973,331 - Pf6N2E2_834 0.11 -0.7 973,331 - Pf6N2E2_834 0.11 -0.0 973,409 - Pf6N2E2_834 0.13 +0.8 973,643 + Pf6N2E2_834 0.21 -0.1 973,644 - Pf6N2E2_834 0.21 +0.3
Or see this region's nucleotide sequence