Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_634 and Pf6N2E2_635 are separated by 179 nucleotides Pf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotides Pf6N2E2_636 and Pf6N2E2_637 are separated by 125 nucleotides
Pf6N2E2_634 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 722,686 to 727,554
_634
Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138
_635
Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725
_636
Pf6N2E2_637 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 728,851 to 730,284
_637
Position (kb) 728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 727.486 kb on + strand at 727.486 kb on + strand at 727.856 kb on - strand, within Pf6N2E2_635 at 727.876 kb on + strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.984 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.047 kb on - strand, within Pf6N2E2_635 at 728.083 kb on + strand, within Pf6N2E2_635 at 728.084 kb on - strand, within Pf6N2E2_635 at 728.196 kb on + strand at 728.196 kb on + strand at 728.197 kb on - strand at 728.244 kb on + strand at 728.424 kb on - strand at 728.449 kb on + strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.603 kb on - strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.699 kb on + strand at 728.700 kb on - strand at 728.871 kb on + strand at 728.982 kb on - strand at 729.058 kb on - strand, within Pf6N2E2_637 at 729.344 kb on + strand, within Pf6N2E2_637 at 729.453 kb on - strand, within Pf6N2E2_637 at 729.531 kb on - strand, within Pf6N2E2_637
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 727,486 + +0.6 727,486 + +0.2 727,856 - Pf6N2E2_635 0.30 +0.5 727,876 + Pf6N2E2_635 0.35 +0.2 727,877 - Pf6N2E2_635 0.35 +1.0 727,877 - Pf6N2E2_635 0.35 -1.0 727,930 + Pf6N2E2_635 0.48 -0.0 727,930 + Pf6N2E2_635 0.48 -2.0 727,930 + Pf6N2E2_635 0.48 -0.7 727,930 + Pf6N2E2_635 0.48 +0.1 727,931 - Pf6N2E2_635 0.49 +0.9 727,931 - Pf6N2E2_635 0.49 +0.8 727,931 - Pf6N2E2_635 0.49 +0.3 727,931 - Pf6N2E2_635 0.49 +0.9 727,931 - Pf6N2E2_635 0.49 -0.9 727,984 + Pf6N2E2_635 0.62 -0.2 728,046 + Pf6N2E2_635 0.77 +0.6 728,046 + Pf6N2E2_635 0.77 +0.1 728,046 + Pf6N2E2_635 0.77 -1.2 728,047 - Pf6N2E2_635 0.77 +0.6 728,083 + Pf6N2E2_635 0.86 -0.1 728,084 - Pf6N2E2_635 0.86 +0.3 728,196 + -0.5 728,196 + +0.9 728,197 - -0.2 728,244 + +0.3 728,424 - +1.9 728,449 + -0.3 728,450 - +1.8 728,450 - -3.5 728,450 - -0.3 728,602 + Pf6N2E2_636 0.58 -2.4 728,602 + Pf6N2E2_636 0.58 +0.5 728,602 + Pf6N2E2_636 0.58 -1.6 728,602 + Pf6N2E2_636 0.58 -1.1 728,602 + Pf6N2E2_636 0.58 -0.1 728,603 - Pf6N2E2_636 0.58 +0.8 728,604 + Pf6N2E2_636 0.59 -0.4 728,604 + Pf6N2E2_636 0.59 -2.0 728,604 + Pf6N2E2_636 0.59 -0.2 728,604 + Pf6N2E2_636 0.59 +0.5 728,605 - Pf6N2E2_636 0.59 -1.0 728,605 - Pf6N2E2_636 0.59 -0.5 728,605 - Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 -1.3 728,605 - Pf6N2E2_636 0.59 -0.1 728,605 - Pf6N2E2_636 0.59 -1.1 728,699 + +1.7 728,700 - +0.9 728,871 + -1.8 728,982 - +0.6 729,058 - Pf6N2E2_637 0.14 +0.7 729,344 + Pf6N2E2_637 0.34 +0.4 729,453 - Pf6N2E2_637 0.42 +0.0 729,531 - Pf6N2E2_637 0.47 +1.6
Or see this region's nucleotide sequence