Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_485

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotidesPf6N2E2_485 and Pf6N2E2_486 overlap by 1 nucleotidesPf6N2E2_486 and Pf6N2E2_487 are separated by 75 nucleotides Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342 _484 Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819 _485 Pf6N2E2_486 - TRAP-type C4-dicarboxylate transport system, small permease component, at 552,819 to 553,346 _486 Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390 _487 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 550.621 kb on + strand, within Pf6N2E2_484at 550.622 kb on - strand, within Pf6N2E2_484at 550.633 kb on + strand, within Pf6N2E2_484at 550.633 kb on + strand, within Pf6N2E2_484at 550.634 kb on - strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.743 kb on + strand, within Pf6N2E2_484at 550.870 kb on + strand, within Pf6N2E2_484at 550.871 kb on - strand, within Pf6N2E2_484at 551.540 kb on + strandat 551.541 kb on - strandat 551.541 kb on - strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.618 kb on + strandat 551.618 kb on + strandat 551.879 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 552.006 kb on + strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.050 kb on + strand, within Pf6N2E2_485at 552.224 kb on + strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.348 kb on - strand, within Pf6N2E2_485at 552.566 kb on - strand, within Pf6N2E2_485at 552.787 kb on + strandat 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.170 kb on - strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.174 kb on - strand, within Pf6N2E2_486at 553.309 kb on + strandat 553.309 kb on + strandat 553.325 kb on + strandat 553.325 kb on + strandat 553.326 kb on - strandat 553.359 kb on + strandat 553.359 kb on + strandat 553.424 kb on - strandat 553.440 kb on - strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.735 kb on + strand, within Pf6N2E2_487

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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550,621 + Pf6N2E2_484 0.17 +1.5
550,622 - Pf6N2E2_484 0.17 -0.2
550,633 + Pf6N2E2_484 0.18 -0.3
550,633 + Pf6N2E2_484 0.18 -0.6
550,634 - Pf6N2E2_484 0.19 -0.6
550,659 + Pf6N2E2_484 0.21 -0.3
550,659 + Pf6N2E2_484 0.21 +0.1
550,659 + Pf6N2E2_484 0.21 -1.0
550,659 + Pf6N2E2_484 0.21 -0.3
550,660 - Pf6N2E2_484 0.21 +2.1
550,660 - Pf6N2E2_484 0.21 -0.2
550,660 - Pf6N2E2_484 0.21 +0.7
550,671 + Pf6N2E2_484 0.23 +0.5
550,671 + Pf6N2E2_484 0.23 -0.2
550,671 + Pf6N2E2_484 0.23 -0.8
550,672 - Pf6N2E2_484 0.23 -0.9
550,672 - Pf6N2E2_484 0.23 -1.5
550,672 - Pf6N2E2_484 0.23 -0.1
550,672 - Pf6N2E2_484 0.23 +0.6
550,672 - Pf6N2E2_484 0.23 +0.8
550,672 - Pf6N2E2_484 0.23 -0.9
550,672 - Pf6N2E2_484 0.23 -0.3
550,672 - Pf6N2E2_484 0.23 -1.0
550,743 + Pf6N2E2_484 0.31 -0.5
550,870 + Pf6N2E2_484 0.46 +0.8
550,871 - Pf6N2E2_484 0.46 +0.2
551,540 + +1.5
551,541 - -0.7
551,541 - -0.3
551,582 + +0.3
551,582 + +0.7
551,582 + -0.4
551,582 + -0.8
551,582 + -0.1
551,582 + -0.4
551,582 + -0.1
551,583 - -1.7
551,583 - +0.2
551,583 - -0.6
551,583 - -0.4
551,583 - +0.4
551,583 - -0.8
551,618 + +0.5
551,618 + +1.2
551,879 + Pf6N2E2_485 0.27 -0.3
551,948 + Pf6N2E2_485 0.32 -0.5
551,948 + Pf6N2E2_485 0.32 -0.8
551,949 - Pf6N2E2_485 0.32 -1.5
551,949 - Pf6N2E2_485 0.32 -0.8
552,006 + Pf6N2E2_485 0.36 +3.1
552,007 - Pf6N2E2_485 0.37 +0.9
552,007 - Pf6N2E2_485 0.37 +1.5
552,007 - Pf6N2E2_485 0.37 -0.6
552,042 - Pf6N2E2_485 0.39 -0.0
552,042 - Pf6N2E2_485 0.39 -1.0
552,050 + Pf6N2E2_485 0.40 +0.5
552,224 + Pf6N2E2_485 0.53 -1.7
552,225 - Pf6N2E2_485 0.54 -0.8
552,225 - Pf6N2E2_485 0.54 -1.7
552,225 - Pf6N2E2_485 0.54 +0.7
552,225 - Pf6N2E2_485 0.54 -1.8
552,225 - Pf6N2E2_485 0.54 -1.2
552,348 - Pf6N2E2_485 0.63 -0.8
552,566 - Pf6N2E2_485 0.80 +1.5
552,787 + -1.3
552,946 + Pf6N2E2_486 0.24 -1.0
552,946 + Pf6N2E2_486 0.24 +0.5
552,946 + Pf6N2E2_486 0.24 -1.3
552,946 + Pf6N2E2_486 0.24 -0.5
552,946 + Pf6N2E2_486 0.24 +0.6
552,946 + Pf6N2E2_486 0.24 -0.4
552,947 - Pf6N2E2_486 0.24 +1.0
552,947 - Pf6N2E2_486 0.24 -1.4
552,947 - Pf6N2E2_486 0.24 -1.6
552,947 - Pf6N2E2_486 0.24 +0.1
553,056 + Pf6N2E2_486 0.45 +0.5
553,056 + Pf6N2E2_486 0.45 +0.0
553,056 + Pf6N2E2_486 0.45 -1.0
553,057 - Pf6N2E2_486 0.45 +0.7
553,057 - Pf6N2E2_486 0.45 -3.0
553,057 - Pf6N2E2_486 0.45 -0.7
553,057 - Pf6N2E2_486 0.45 -0.4
553,169 + Pf6N2E2_486 0.66 +0.1
553,169 + Pf6N2E2_486 0.66 -1.2
553,170 - Pf6N2E2_486 0.66 -1.5
553,173 + Pf6N2E2_486 0.67 -0.2
553,173 + Pf6N2E2_486 0.67 +0.5
553,173 + Pf6N2E2_486 0.67 +0.2
553,174 - Pf6N2E2_486 0.67 -1.3
553,309 + -1.5
553,309 + -0.2
553,325 + +0.8
553,325 + +0.8
553,326 - +0.4
553,359 + -1.6
553,359 + +0.8
553,424 - -0.4
553,440 - -0.7
553,501 + -0.2
553,501 + +1.2
553,501 + +1.8
553,502 - -0.1
553,502 - -1.0
553,502 - -0.3
553,717 + Pf6N2E2_487 0.30 +0.2
553,717 + Pf6N2E2_487 0.30 -1.0
553,717 + Pf6N2E2_487 0.30 -2.6
553,717 + Pf6N2E2_487 0.30 -1.3
553,718 - Pf6N2E2_487 0.31 +1.2
553,718 - Pf6N2E2_487 0.31 -0.7
553,718 - Pf6N2E2_487 0.31 +1.3
553,720 + Pf6N2E2_487 0.31 -0.3
553,720 + Pf6N2E2_487 0.31 -1.0
553,720 + Pf6N2E2_487 0.31 +1.5
553,720 + Pf6N2E2_487 0.31 -0.1
553,720 + Pf6N2E2_487 0.31 +0.9
553,721 - Pf6N2E2_487 0.31 +0.5
553,721 - Pf6N2E2_487 0.31 -0.1
553,735 + Pf6N2E2_487 0.32 -0.2

Or see this region's nucleotide sequence