Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3409

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3408 and Pf6N2E2_3409 are separated by 30 nucleotidesPf6N2E2_3409 and Pf6N2E2_3410 are separated by 24 nucleotidesPf6N2E2_3410 and Pf6N2E2_3411 are separated by 28 nucleotides Pf6N2E2_3408 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,952,189 to 3,953,277 _3408 Pf6N2E2_3409 - Hypothetical transcriptional regulator YqhC, at 3,953,308 to 3,954,246 _3409 Pf6N2E2_3410 - Short-chain dehydrogenase/reductase SDR, at 3,954,271 to 3,955,104 _3410 Pf6N2E2_3411 - hypothetical protein, at 3,955,133 to 3,955,258 _3411 Position (kb) 3953 3954 3955Strain fitness (log2 ratio) -2 -1 0 1 2at 3952.315 kb on - strand, within Pf6N2E2_3408at 3952.315 kb on - strand, within Pf6N2E2_3408at 3952.415 kb on + strand, within Pf6N2E2_3408at 3952.433 kb on + strand, within Pf6N2E2_3408at 3952.481 kb on + strand, within Pf6N2E2_3408at 3952.481 kb on + strand, within Pf6N2E2_3408at 3952.482 kb on - strand, within Pf6N2E2_3408at 3952.522 kb on + strand, within Pf6N2E2_3408at 3952.522 kb on + strand, within Pf6N2E2_3408at 3952.523 kb on - strand, within Pf6N2E2_3408at 3952.523 kb on - strand, within Pf6N2E2_3408at 3952.696 kb on + strand, within Pf6N2E2_3408at 3952.696 kb on + strand, within Pf6N2E2_3408at 3952.697 kb on - strand, within Pf6N2E2_3408at 3952.697 kb on - strand, within Pf6N2E2_3408at 3952.931 kb on - strand, within Pf6N2E2_3408at 3953.200 kb on - strandat 3953.244 kb on - strandat 3953.276 kb on - strandat 3953.324 kb on + strandat 3953.324 kb on + strandat 3953.324 kb on + strandat 3953.325 kb on - strandat 3953.325 kb on - strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.357 kb on + strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.358 kb on - strandat 3953.445 kb on - strand, within Pf6N2E2_3409at 3953.531 kb on + strand, within Pf6N2E2_3409at 3953.636 kb on + strand, within Pf6N2E2_3409at 3953.636 kb on + strand, within Pf6N2E2_3409at 3953.637 kb on - strand, within Pf6N2E2_3409at 3953.744 kb on + strand, within Pf6N2E2_3409at 3953.744 kb on + strand, within Pf6N2E2_3409at 3953.744 kb on + strand, within Pf6N2E2_3409at 3953.745 kb on - strand, within Pf6N2E2_3409at 3953.745 kb on - strand, within Pf6N2E2_3409at 3953.828 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.855 kb on + strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.856 kb on - strand, within Pf6N2E2_3409at 3953.908 kb on + strand, within Pf6N2E2_3409at 3953.909 kb on - strand, within Pf6N2E2_3409at 3953.909 kb on - strand, within Pf6N2E2_3409at 3953.909 kb on - strand, within Pf6N2E2_3409at 3953.943 kb on + strand, within Pf6N2E2_3409at 3953.943 kb on + strand, within Pf6N2E2_3409at 3953.943 kb on + strand, within Pf6N2E2_3409at 3953.943 kb on + strand, within Pf6N2E2_3409at 3953.944 kb on - strand, within Pf6N2E2_3409at 3953.944 kb on - strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.945 kb on + strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3953.946 kb on - strand, within Pf6N2E2_3409at 3954.020 kb on + strand, within Pf6N2E2_3409at 3954.036 kb on - strand, within Pf6N2E2_3409at 3954.036 kb on - strand, within Pf6N2E2_3409at 3954.036 kb on - strand, within Pf6N2E2_3409at 3954.041 kb on + strand, within Pf6N2E2_3409at 3954.041 kb on + strand, within Pf6N2E2_3409at 3954.042 kb on - strand, within Pf6N2E2_3409at 3954.042 kb on - strand, within Pf6N2E2_3409at 3954.104 kb on + strand, within Pf6N2E2_3409at 3954.104 kb on + strand, within Pf6N2E2_3409at 3954.104 kb on + strand, within Pf6N2E2_3409at 3954.105 kb on - strand, within Pf6N2E2_3409at 3954.105 kb on - strand, within Pf6N2E2_3409at 3954.105 kb on - strand, within Pf6N2E2_3409at 3954.151 kb on + strand, within Pf6N2E2_3409at 3954.151 kb on + strand, within Pf6N2E2_3409at 3954.151 kb on + strand, within Pf6N2E2_3409at 3954.152 kb on - strand, within Pf6N2E2_3409at 3954.152 kb on - strand, within Pf6N2E2_3409at 3954.152 kb on - strand, within Pf6N2E2_3409at 3954.152 kb on - strand, within Pf6N2E2_3409at 3954.176 kb on + strandat 3954.176 kb on + strandat 3954.176 kb on + strandat 3954.177 kb on - strandat 3954.337 kb on - strandat 3954.500 kb on + strand, within Pf6N2E2_3410at 3954.657 kb on - strand, within Pf6N2E2_3410at 3954.657 kb on - strand, within Pf6N2E2_3410at 3954.657 kb on - strand, within Pf6N2E2_3410at 3954.657 kb on - strand, within Pf6N2E2_3410at 3954.659 kb on + strand, within Pf6N2E2_3410at 3954.659 kb on + strand, within Pf6N2E2_3410at 3954.660 kb on - strand, within Pf6N2E2_3410at 3954.660 kb on - strand, within Pf6N2E2_3410at 3954.711 kb on + strand, within Pf6N2E2_3410at 3954.711 kb on + strand, within Pf6N2E2_3410at 3955.121 kb on + strandat 3955.121 kb on + strandat 3955.122 kb on - strandat 3955.138 kb on - strandat 3955.160 kb on + strand, within Pf6N2E2_3411at 3955.161 kb on - strand, within Pf6N2E2_3411at 3955.161 kb on - strand, within Pf6N2E2_3411at 3955.161 kb on - strand, within Pf6N2E2_3411at 3955.161 kb on - strand, within Pf6N2E2_3411at 3955.187 kb on + strand, within Pf6N2E2_3411at 3955.187 kb on + strand, within Pf6N2E2_3411at 3955.188 kb on - strand, within Pf6N2E2_3411at 3955.193 kb on + strand, within Pf6N2E2_3411at 3955.193 kb on + strand, within Pf6N2E2_3411at 3955.193 kb on + strand, within Pf6N2E2_3411at 3955.193 kb on + strand, within Pf6N2E2_3411at 3955.194 kb on - strand, within Pf6N2E2_3411

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,952,315 - Pf6N2E2_3408 0.12 -0.8
3,952,315 - Pf6N2E2_3408 0.12 -0.6
3,952,415 + Pf6N2E2_3408 0.21 -0.3
3,952,433 + Pf6N2E2_3408 0.22 -1.8
3,952,481 + Pf6N2E2_3408 0.27 +0.0
3,952,481 + Pf6N2E2_3408 0.27 +0.6
3,952,482 - Pf6N2E2_3408 0.27 +0.6
3,952,522 + Pf6N2E2_3408 0.31 +1.8
3,952,522 + Pf6N2E2_3408 0.31 +0.5
3,952,523 - Pf6N2E2_3408 0.31 -1.9
3,952,523 - Pf6N2E2_3408 0.31 +0.4
3,952,696 + Pf6N2E2_3408 0.47 -0.2
3,952,696 + Pf6N2E2_3408 0.47 +0.3
3,952,697 - Pf6N2E2_3408 0.47 -0.0
3,952,697 - Pf6N2E2_3408 0.47 +0.5
3,952,931 - Pf6N2E2_3408 0.68 -0.9
3,953,200 - -0.2
3,953,244 - +1.2
3,953,276 - +0.1
3,953,324 + +1.5
3,953,324 + +0.3
3,953,324 + -0.9
3,953,325 - -0.1
3,953,325 - +0.6
3,953,357 + +0.5
3,953,357 + +0.4
3,953,357 + -0.6
3,953,357 + +0.5
3,953,357 + +2.5
3,953,357 + +0.1
3,953,357 + -0.5
3,953,357 + +1.1
3,953,357 + -1.2
3,953,357 + -0.2
3,953,358 - +0.5
3,953,358 - +0.9
3,953,358 - +0.9
3,953,358 - -0.2
3,953,358 - +1.2
3,953,358 - -0.3
3,953,358 - +0.1
3,953,445 - Pf6N2E2_3409 0.15 -0.4
3,953,531 + Pf6N2E2_3409 0.24 -1.0
3,953,636 + Pf6N2E2_3409 0.35 -0.8
3,953,636 + Pf6N2E2_3409 0.35 +0.6
3,953,637 - Pf6N2E2_3409 0.35 +0.6
3,953,744 + Pf6N2E2_3409 0.46 -1.5
3,953,744 + Pf6N2E2_3409 0.46 +0.6
3,953,744 + Pf6N2E2_3409 0.46 -0.5
3,953,745 - Pf6N2E2_3409 0.47 -0.1
3,953,745 - Pf6N2E2_3409 0.47 +0.1
3,953,828 + Pf6N2E2_3409 0.55 +0.2
3,953,855 + Pf6N2E2_3409 0.58 +0.5
3,953,855 + Pf6N2E2_3409 0.58 -1.7
3,953,855 + Pf6N2E2_3409 0.58 -1.4
3,953,855 + Pf6N2E2_3409 0.58 -1.7
3,953,855 + Pf6N2E2_3409 0.58 +0.4
3,953,855 + Pf6N2E2_3409 0.58 -0.6
3,953,856 - Pf6N2E2_3409 0.58 +0.4
3,953,856 - Pf6N2E2_3409 0.58 +0.3
3,953,856 - Pf6N2E2_3409 0.58 -0.2
3,953,856 - Pf6N2E2_3409 0.58 +0.5
3,953,856 - Pf6N2E2_3409 0.58 +0.9
3,953,856 - Pf6N2E2_3409 0.58 -0.5
3,953,856 - Pf6N2E2_3409 0.58 +0.6
3,953,908 + Pf6N2E2_3409 0.64 +0.4
3,953,909 - Pf6N2E2_3409 0.64 -0.5
3,953,909 - Pf6N2E2_3409 0.64 +0.9
3,953,909 - Pf6N2E2_3409 0.64 +0.2
3,953,943 + Pf6N2E2_3409 0.68 -0.4
3,953,943 + Pf6N2E2_3409 0.68 -0.3
3,953,943 + Pf6N2E2_3409 0.68 +1.3
3,953,943 + Pf6N2E2_3409 0.68 -0.1
3,953,944 - Pf6N2E2_3409 0.68 +1.1
3,953,944 - Pf6N2E2_3409 0.68 -0.1
3,953,945 + Pf6N2E2_3409 0.68 +0.8
3,953,945 + Pf6N2E2_3409 0.68 -2.0
3,953,945 + Pf6N2E2_3409 0.68 -0.5
3,953,945 + Pf6N2E2_3409 0.68 -0.0
3,953,945 + Pf6N2E2_3409 0.68 +0.2
3,953,945 + Pf6N2E2_3409 0.68 +1.2
3,953,945 + Pf6N2E2_3409 0.68 +0.2
3,953,945 + Pf6N2E2_3409 0.68 -0.4
3,953,945 + Pf6N2E2_3409 0.68 +1.4
3,953,945 + Pf6N2E2_3409 0.68 +0.5
3,953,945 + Pf6N2E2_3409 0.68 +0.1
3,953,946 - Pf6N2E2_3409 0.68 -0.9
3,953,946 - Pf6N2E2_3409 0.68 -0.6
3,953,946 - Pf6N2E2_3409 0.68 +0.3
3,953,946 - Pf6N2E2_3409 0.68 +0.5
3,953,946 - Pf6N2E2_3409 0.68 -0.8
3,953,946 - Pf6N2E2_3409 0.68 -1.1
3,953,946 - Pf6N2E2_3409 0.68 -1.7
3,954,020 + Pf6N2E2_3409 0.76 -0.2
3,954,036 - Pf6N2E2_3409 0.78 +0.5
3,954,036 - Pf6N2E2_3409 0.78 +0.3
3,954,036 - Pf6N2E2_3409 0.78 -0.5
3,954,041 + Pf6N2E2_3409 0.78 -0.2
3,954,041 + Pf6N2E2_3409 0.78 +1.3
3,954,042 - Pf6N2E2_3409 0.78 +0.1
3,954,042 - Pf6N2E2_3409 0.78 +0.3
3,954,104 + Pf6N2E2_3409 0.85 -0.4
3,954,104 + Pf6N2E2_3409 0.85 +0.5
3,954,104 + Pf6N2E2_3409 0.85 +1.1
3,954,105 - Pf6N2E2_3409 0.85 -0.0
3,954,105 - Pf6N2E2_3409 0.85 -0.5
3,954,105 - Pf6N2E2_3409 0.85 -1.6
3,954,151 + Pf6N2E2_3409 0.90 -0.3
3,954,151 + Pf6N2E2_3409 0.90 -0.3
3,954,151 + Pf6N2E2_3409 0.90 -1.2
3,954,152 - Pf6N2E2_3409 0.90 +0.6
3,954,152 - Pf6N2E2_3409 0.90 +1.1
3,954,152 - Pf6N2E2_3409 0.90 -0.1
3,954,152 - Pf6N2E2_3409 0.90 +0.2
3,954,176 + -0.2
3,954,176 + +0.1
3,954,176 + -1.2
3,954,177 - -0.1
3,954,337 - +0.3
3,954,500 + Pf6N2E2_3410 0.27 -1.2
3,954,657 - Pf6N2E2_3410 0.46 -0.4
3,954,657 - Pf6N2E2_3410 0.46 -0.3
3,954,657 - Pf6N2E2_3410 0.46 -0.2
3,954,657 - Pf6N2E2_3410 0.46 +0.1
3,954,659 + Pf6N2E2_3410 0.47 +0.1
3,954,659 + Pf6N2E2_3410 0.47 +0.4
3,954,660 - Pf6N2E2_3410 0.47 +0.7
3,954,660 - Pf6N2E2_3410 0.47 -0.7
3,954,711 + Pf6N2E2_3410 0.53 -1.6
3,954,711 + Pf6N2E2_3410 0.53 +1.6
3,955,121 + +0.3
3,955,121 + +0.0
3,955,122 - -0.7
3,955,138 - +0.2
3,955,160 + Pf6N2E2_3411 0.21 -0.1
3,955,161 - Pf6N2E2_3411 0.22 +0.1
3,955,161 - Pf6N2E2_3411 0.22 -0.2
3,955,161 - Pf6N2E2_3411 0.22 -0.1
3,955,161 - Pf6N2E2_3411 0.22 +1.0
3,955,187 + Pf6N2E2_3411 0.43 -0.1
3,955,187 + Pf6N2E2_3411 0.43 +1.1
3,955,188 - Pf6N2E2_3411 0.44 -0.0
3,955,193 + Pf6N2E2_3411 0.48 -0.7
3,955,193 + Pf6N2E2_3411 0.48 -0.8
3,955,193 + Pf6N2E2_3411 0.48 -0.5
3,955,193 + Pf6N2E2_3411 0.48 +1.2
3,955,194 - Pf6N2E2_3411 0.48 -0.1

Or see this region's nucleotide sequence