Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3408 and Pf6N2E2_3409 are separated by 30 nucleotides Pf6N2E2_3409 and Pf6N2E2_3410 are separated by 24 nucleotides Pf6N2E2_3410 and Pf6N2E2_3411 are separated by 28 nucleotides
Pf6N2E2_3408 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,952,189 to 3,953,277
_3408
Pf6N2E2_3409 - Hypothetical transcriptional regulator YqhC, at 3,953,308 to 3,954,246
_3409
Pf6N2E2_3410 - Short-chain dehydrogenase/reductase SDR, at 3,954,271 to 3,955,104
_3410
Pf6N2E2_3411 - hypothetical protein, at 3,955,133 to 3,955,258
_3411
Position (kb)
3953
3954
3955 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3952.315 kb on - strand, within Pf6N2E2_3408 at 3952.315 kb on - strand, within Pf6N2E2_3408 at 3952.415 kb on + strand, within Pf6N2E2_3408 at 3952.433 kb on + strand, within Pf6N2E2_3408 at 3952.481 kb on + strand, within Pf6N2E2_3408 at 3952.481 kb on + strand, within Pf6N2E2_3408 at 3952.482 kb on - strand, within Pf6N2E2_3408 at 3952.522 kb on + strand, within Pf6N2E2_3408 at 3952.522 kb on + strand, within Pf6N2E2_3408 at 3952.523 kb on - strand, within Pf6N2E2_3408 at 3952.523 kb on - strand, within Pf6N2E2_3408 at 3952.696 kb on + strand, within Pf6N2E2_3408 at 3952.696 kb on + strand, within Pf6N2E2_3408 at 3952.697 kb on - strand, within Pf6N2E2_3408 at 3952.697 kb on - strand, within Pf6N2E2_3408 at 3952.931 kb on - strand, within Pf6N2E2_3408 at 3953.200 kb on - strand at 3953.244 kb on - strand at 3953.276 kb on - strand at 3953.324 kb on + strand at 3953.324 kb on + strand at 3953.324 kb on + strand at 3953.325 kb on - strand at 3953.325 kb on - strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.357 kb on + strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.358 kb on - strand at 3953.445 kb on - strand, within Pf6N2E2_3409 at 3953.531 kb on + strand, within Pf6N2E2_3409 at 3953.636 kb on + strand, within Pf6N2E2_3409 at 3953.636 kb on + strand, within Pf6N2E2_3409 at 3953.637 kb on - strand, within Pf6N2E2_3409 at 3953.744 kb on + strand, within Pf6N2E2_3409 at 3953.744 kb on + strand, within Pf6N2E2_3409 at 3953.744 kb on + strand, within Pf6N2E2_3409 at 3953.745 kb on - strand, within Pf6N2E2_3409 at 3953.745 kb on - strand, within Pf6N2E2_3409 at 3953.828 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.855 kb on + strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.856 kb on - strand, within Pf6N2E2_3409 at 3953.908 kb on + strand, within Pf6N2E2_3409 at 3953.909 kb on - strand, within Pf6N2E2_3409 at 3953.909 kb on - strand, within Pf6N2E2_3409 at 3953.909 kb on - strand, within Pf6N2E2_3409 at 3953.943 kb on + strand, within Pf6N2E2_3409 at 3953.943 kb on + strand, within Pf6N2E2_3409 at 3953.943 kb on + strand, within Pf6N2E2_3409 at 3953.943 kb on + strand, within Pf6N2E2_3409 at 3953.944 kb on - strand, within Pf6N2E2_3409 at 3953.944 kb on - strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.945 kb on + strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3953.946 kb on - strand, within Pf6N2E2_3409 at 3954.020 kb on + strand, within Pf6N2E2_3409 at 3954.036 kb on - strand, within Pf6N2E2_3409 at 3954.036 kb on - strand, within Pf6N2E2_3409 at 3954.036 kb on - strand, within Pf6N2E2_3409 at 3954.041 kb on + strand, within Pf6N2E2_3409 at 3954.041 kb on + strand, within Pf6N2E2_3409 at 3954.042 kb on - strand, within Pf6N2E2_3409 at 3954.042 kb on - strand, within Pf6N2E2_3409 at 3954.104 kb on + strand, within Pf6N2E2_3409 at 3954.104 kb on + strand, within Pf6N2E2_3409 at 3954.104 kb on + strand, within Pf6N2E2_3409 at 3954.105 kb on - strand, within Pf6N2E2_3409 at 3954.105 kb on - strand, within Pf6N2E2_3409 at 3954.105 kb on - strand, within Pf6N2E2_3409 at 3954.151 kb on + strand, within Pf6N2E2_3409 at 3954.151 kb on + strand, within Pf6N2E2_3409 at 3954.151 kb on + strand, within Pf6N2E2_3409 at 3954.152 kb on - strand, within Pf6N2E2_3409 at 3954.152 kb on - strand, within Pf6N2E2_3409 at 3954.152 kb on - strand, within Pf6N2E2_3409 at 3954.152 kb on - strand, within Pf6N2E2_3409 at 3954.176 kb on + strand at 3954.176 kb on + strand at 3954.176 kb on + strand at 3954.177 kb on - strand at 3954.337 kb on - strand at 3954.500 kb on + strand, within Pf6N2E2_3410 at 3954.657 kb on - strand, within Pf6N2E2_3410 at 3954.657 kb on - strand, within Pf6N2E2_3410 at 3954.657 kb on - strand, within Pf6N2E2_3410 at 3954.657 kb on - strand, within Pf6N2E2_3410 at 3954.659 kb on + strand, within Pf6N2E2_3410 at 3954.659 kb on + strand, within Pf6N2E2_3410 at 3954.660 kb on - strand, within Pf6N2E2_3410 at 3954.660 kb on - strand, within Pf6N2E2_3410 at 3954.711 kb on + strand, within Pf6N2E2_3410 at 3954.711 kb on + strand, within Pf6N2E2_3410 at 3955.121 kb on + strand at 3955.121 kb on + strand at 3955.122 kb on - strand at 3955.138 kb on - strand at 3955.160 kb on + strand, within Pf6N2E2_3411 at 3955.161 kb on - strand, within Pf6N2E2_3411 at 3955.161 kb on - strand, within Pf6N2E2_3411 at 3955.161 kb on - strand, within Pf6N2E2_3411 at 3955.161 kb on - strand, within Pf6N2E2_3411 at 3955.187 kb on + strand, within Pf6N2E2_3411 at 3955.187 kb on + strand, within Pf6N2E2_3411 at 3955.188 kb on - strand, within Pf6N2E2_3411 at 3955.193 kb on + strand, within Pf6N2E2_3411 at 3955.193 kb on + strand, within Pf6N2E2_3411 at 3955.193 kb on + strand, within Pf6N2E2_3411 at 3955.193 kb on + strand, within Pf6N2E2_3411 at 3955.194 kb on - strand, within Pf6N2E2_3411
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,952,315 - Pf6N2E2_3408 0.12 -0.8 3,952,315 - Pf6N2E2_3408 0.12 -0.6 3,952,415 + Pf6N2E2_3408 0.21 -0.3 3,952,433 + Pf6N2E2_3408 0.22 -1.8 3,952,481 + Pf6N2E2_3408 0.27 +0.0 3,952,481 + Pf6N2E2_3408 0.27 +0.6 3,952,482 - Pf6N2E2_3408 0.27 +0.6 3,952,522 + Pf6N2E2_3408 0.31 +1.8 3,952,522 + Pf6N2E2_3408 0.31 +0.5 3,952,523 - Pf6N2E2_3408 0.31 -1.9 3,952,523 - Pf6N2E2_3408 0.31 +0.4 3,952,696 + Pf6N2E2_3408 0.47 -0.2 3,952,696 + Pf6N2E2_3408 0.47 +0.3 3,952,697 - Pf6N2E2_3408 0.47 -0.0 3,952,697 - Pf6N2E2_3408 0.47 +0.5 3,952,931 - Pf6N2E2_3408 0.68 -0.9 3,953,200 - -0.2 3,953,244 - +1.2 3,953,276 - +0.1 3,953,324 + +1.5 3,953,324 + +0.3 3,953,324 + -0.9 3,953,325 - -0.1 3,953,325 - +0.6 3,953,357 + +0.5 3,953,357 + +0.4 3,953,357 + -0.6 3,953,357 + +0.5 3,953,357 + +2.5 3,953,357 + +0.1 3,953,357 + -0.5 3,953,357 + +1.1 3,953,357 + -1.2 3,953,357 + -0.2 3,953,358 - +0.5 3,953,358 - +0.9 3,953,358 - +0.9 3,953,358 - -0.2 3,953,358 - +1.2 3,953,358 - -0.3 3,953,358 - +0.1 3,953,445 - Pf6N2E2_3409 0.15 -0.4 3,953,531 + Pf6N2E2_3409 0.24 -1.0 3,953,636 + Pf6N2E2_3409 0.35 -0.8 3,953,636 + Pf6N2E2_3409 0.35 +0.6 3,953,637 - Pf6N2E2_3409 0.35 +0.6 3,953,744 + Pf6N2E2_3409 0.46 -1.5 3,953,744 + Pf6N2E2_3409 0.46 +0.6 3,953,744 + Pf6N2E2_3409 0.46 -0.5 3,953,745 - Pf6N2E2_3409 0.47 -0.1 3,953,745 - Pf6N2E2_3409 0.47 +0.1 3,953,828 + Pf6N2E2_3409 0.55 +0.2 3,953,855 + Pf6N2E2_3409 0.58 +0.5 3,953,855 + Pf6N2E2_3409 0.58 -1.7 3,953,855 + Pf6N2E2_3409 0.58 -1.4 3,953,855 + Pf6N2E2_3409 0.58 -1.7 3,953,855 + Pf6N2E2_3409 0.58 +0.4 3,953,855 + Pf6N2E2_3409 0.58 -0.6 3,953,856 - Pf6N2E2_3409 0.58 +0.4 3,953,856 - Pf6N2E2_3409 0.58 +0.3 3,953,856 - Pf6N2E2_3409 0.58 -0.2 3,953,856 - Pf6N2E2_3409 0.58 +0.5 3,953,856 - Pf6N2E2_3409 0.58 +0.9 3,953,856 - Pf6N2E2_3409 0.58 -0.5 3,953,856 - Pf6N2E2_3409 0.58 +0.6 3,953,908 + Pf6N2E2_3409 0.64 +0.4 3,953,909 - Pf6N2E2_3409 0.64 -0.5 3,953,909 - Pf6N2E2_3409 0.64 +0.9 3,953,909 - Pf6N2E2_3409 0.64 +0.2 3,953,943 + Pf6N2E2_3409 0.68 -0.4 3,953,943 + Pf6N2E2_3409 0.68 -0.3 3,953,943 + Pf6N2E2_3409 0.68 +1.3 3,953,943 + Pf6N2E2_3409 0.68 -0.1 3,953,944 - Pf6N2E2_3409 0.68 +1.1 3,953,944 - Pf6N2E2_3409 0.68 -0.1 3,953,945 + Pf6N2E2_3409 0.68 +0.8 3,953,945 + Pf6N2E2_3409 0.68 -2.0 3,953,945 + Pf6N2E2_3409 0.68 -0.5 3,953,945 + Pf6N2E2_3409 0.68 -0.0 3,953,945 + Pf6N2E2_3409 0.68 +0.2 3,953,945 + Pf6N2E2_3409 0.68 +1.2 3,953,945 + Pf6N2E2_3409 0.68 +0.2 3,953,945 + Pf6N2E2_3409 0.68 -0.4 3,953,945 + Pf6N2E2_3409 0.68 +1.4 3,953,945 + Pf6N2E2_3409 0.68 +0.5 3,953,945 + Pf6N2E2_3409 0.68 +0.1 3,953,946 - Pf6N2E2_3409 0.68 -0.9 3,953,946 - Pf6N2E2_3409 0.68 -0.6 3,953,946 - Pf6N2E2_3409 0.68 +0.3 3,953,946 - Pf6N2E2_3409 0.68 +0.5 3,953,946 - Pf6N2E2_3409 0.68 -0.8 3,953,946 - Pf6N2E2_3409 0.68 -1.1 3,953,946 - Pf6N2E2_3409 0.68 -1.7 3,954,020 + Pf6N2E2_3409 0.76 -0.2 3,954,036 - Pf6N2E2_3409 0.78 +0.5 3,954,036 - Pf6N2E2_3409 0.78 +0.3 3,954,036 - Pf6N2E2_3409 0.78 -0.5 3,954,041 + Pf6N2E2_3409 0.78 -0.2 3,954,041 + Pf6N2E2_3409 0.78 +1.3 3,954,042 - Pf6N2E2_3409 0.78 +0.1 3,954,042 - Pf6N2E2_3409 0.78 +0.3 3,954,104 + Pf6N2E2_3409 0.85 -0.4 3,954,104 + Pf6N2E2_3409 0.85 +0.5 3,954,104 + Pf6N2E2_3409 0.85 +1.1 3,954,105 - Pf6N2E2_3409 0.85 -0.0 3,954,105 - Pf6N2E2_3409 0.85 -0.5 3,954,105 - Pf6N2E2_3409 0.85 -1.6 3,954,151 + Pf6N2E2_3409 0.90 -0.3 3,954,151 + Pf6N2E2_3409 0.90 -0.3 3,954,151 + Pf6N2E2_3409 0.90 -1.2 3,954,152 - Pf6N2E2_3409 0.90 +0.6 3,954,152 - Pf6N2E2_3409 0.90 +1.1 3,954,152 - Pf6N2E2_3409 0.90 -0.1 3,954,152 - Pf6N2E2_3409 0.90 +0.2 3,954,176 + -0.2 3,954,176 + +0.1 3,954,176 + -1.2 3,954,177 - -0.1 3,954,337 - +0.3 3,954,500 + Pf6N2E2_3410 0.27 -1.2 3,954,657 - Pf6N2E2_3410 0.46 -0.4 3,954,657 - Pf6N2E2_3410 0.46 -0.3 3,954,657 - Pf6N2E2_3410 0.46 -0.2 3,954,657 - Pf6N2E2_3410 0.46 +0.1 3,954,659 + Pf6N2E2_3410 0.47 +0.1 3,954,659 + Pf6N2E2_3410 0.47 +0.4 3,954,660 - Pf6N2E2_3410 0.47 +0.7 3,954,660 - Pf6N2E2_3410 0.47 -0.7 3,954,711 + Pf6N2E2_3410 0.53 -1.6 3,954,711 + Pf6N2E2_3410 0.53 +1.6 3,955,121 + +0.3 3,955,121 + +0.0 3,955,122 - -0.7 3,955,138 - +0.2 3,955,160 + Pf6N2E2_3411 0.21 -0.1 3,955,161 - Pf6N2E2_3411 0.22 +0.1 3,955,161 - Pf6N2E2_3411 0.22 -0.2 3,955,161 - Pf6N2E2_3411 0.22 -0.1 3,955,161 - Pf6N2E2_3411 0.22 +1.0 3,955,187 + Pf6N2E2_3411 0.43 -0.1 3,955,187 + Pf6N2E2_3411 0.43 +1.1 3,955,188 - Pf6N2E2_3411 0.44 -0.0 3,955,193 + Pf6N2E2_3411 0.48 -0.7 3,955,193 + Pf6N2E2_3411 0.48 -0.8 3,955,193 + Pf6N2E2_3411 0.48 -0.5 3,955,193 + Pf6N2E2_3411 0.48 +1.2 3,955,194 - Pf6N2E2_3411 0.48 -0.1
Or see this region's nucleotide sequence