Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3196 and Pf6N2E2_3197 are separated by 63 nucleotides Pf6N2E2_3197 and Pf6N2E2_3198 are separated by 43 nucleotides Pf6N2E2_3198 and Pf6N2E2_3199 overlap by 4 nucleotides
Pf6N2E2_3196 - Protein-export membrane protein SecD (TC 3.A.5.1.1), at 3,689,260 to 3,691,128
_3196
Pf6N2E2_3197 - Preprotein translocase subunit YajC (TC 3.A.5.1.1), at 3,691,192 to 3,691,530
_3197
Pf6N2E2_3198 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 3,691,574 to 3,692,707
_3198
Pf6N2E2_3199 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 3,692,704 to 3,693,753
_3199
Position (kb)
3691
3692
3693 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3691.180 kb on - strand at 3691.180 kb on - strand at 3691.190 kb on - strand at 3691.190 kb on - strand at 3691.194 kb on - strand at 3691.194 kb on - strand at 3691.194 kb on - strand at 3691.194 kb on - strand at 3691.194 kb on - strand at 3691.194 kb on - strand at 3691.551 kb on - strand at 3691.612 kb on - strand at 3691.640 kb on - strand at 3691.673 kb on - strand at 3691.706 kb on - strand, within Pf6N2E2_3198 at 3691.715 kb on - strand, within Pf6N2E2_3198 at 3692.587 kb on - strand, within Pf6N2E2_3198 at 3692.708 kb on - strand at 3692.781 kb on - strand at 3692.804 kb on + strand at 3692.804 kb on + strand at 3692.805 kb on - strand at 3692.805 kb on - strand at 3692.805 kb on - strand at 3692.926 kb on - strand, within Pf6N2E2_3199 at 3693.261 kb on - strand, within Pf6N2E2_3199 at 3693.307 kb on + strand, within Pf6N2E2_3199 at 3693.308 kb on - strand, within Pf6N2E2_3199 at 3693.309 kb on + strand, within Pf6N2E2_3199 at 3693.309 kb on + strand, within Pf6N2E2_3199 at 3693.309 kb on + strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.310 kb on - strand, within Pf6N2E2_3199 at 3693.312 kb on - strand, within Pf6N2E2_3199 at 3693.312 kb on - strand, within Pf6N2E2_3199
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,691,180 - -0.7 3,691,180 - +1.3 3,691,190 - -1.5 3,691,190 - -0.1 3,691,194 - -0.5 3,691,194 - +0.3 3,691,194 - +0.6 3,691,194 - +0.6 3,691,194 - -0.5 3,691,194 - -1.0 3,691,551 - -0.0 3,691,612 - +0.0 3,691,640 - +0.3 3,691,673 - -0.7 3,691,706 - Pf6N2E2_3198 0.12 -0.5 3,691,715 - Pf6N2E2_3198 0.12 +0.8 3,692,587 - Pf6N2E2_3198 0.89 -1.5 3,692,708 - -0.4 3,692,781 - -2.6 3,692,804 + +0.6 3,692,804 + -0.5 3,692,805 - +0.5 3,692,805 - +0.3 3,692,805 - -1.5 3,692,926 - Pf6N2E2_3199 0.21 -1.4 3,693,261 - Pf6N2E2_3199 0.53 +0.5 3,693,307 + Pf6N2E2_3199 0.57 -1.2 3,693,308 - Pf6N2E2_3199 0.58 +0.5 3,693,309 + Pf6N2E2_3199 0.58 -0.2 3,693,309 + Pf6N2E2_3199 0.58 -0.7 3,693,309 + Pf6N2E2_3199 0.58 +1.1 3,693,310 - Pf6N2E2_3199 0.58 -1.3 3,693,310 - Pf6N2E2_3199 0.58 +0.0 3,693,310 - Pf6N2E2_3199 0.58 +1.6 3,693,310 - Pf6N2E2_3199 0.58 -0.3 3,693,310 - Pf6N2E2_3199 0.58 -0.7 3,693,310 - Pf6N2E2_3199 0.58 -0.6 3,693,310 - Pf6N2E2_3199 0.58 -3.2 3,693,310 - Pf6N2E2_3199 0.58 -0.1 3,693,310 - Pf6N2E2_3199 0.58 -0.8 3,693,310 - Pf6N2E2_3199 0.58 -0.3 3,693,310 - Pf6N2E2_3199 0.58 -1.0 3,693,310 - Pf6N2E2_3199 0.58 -0.7 3,693,312 - Pf6N2E2_3199 0.58 -2.6 3,693,312 - Pf6N2E2_3199 0.58 -0.4
Or see this region's nucleotide sequence