Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0478

Experiment: Def methylglyoxal 0.01 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0477 and Psest_0478 are separated by 57 nucleotidesPsest_0478 and Psest_0479 are separated by 217 nucleotidesPsest_0479 and Psest_0480 overlap by 4 nucleotides Psest_0477: Psest_0477 - thiamine biosynthesis protein ThiC, at 526,744 to 528,624 _0477 Psest_0478: Psest_0478 - Protein of unknown function (DUF3298)., at 528,682 to 529,419 _0478 Psest_0479: Psest_0479 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 529,637 to 530,254 _0479 Psest_0480: Psest_0480 - Uncharacterized protein conserved in bacteria, at 530,251 to 530,697 _0480 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 527.701 kb on + strand, within Psest_0477at 527.701 kb on + strand, within Psest_0477at 527.701 kb on + strand, within Psest_0477at 527.701 kb on + strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.702 kb on - strand, within Psest_0477at 527.724 kb on - strand, within Psest_0477at 527.735 kb on - strand, within Psest_0477at 527.872 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.094 kb on + strand, within Psest_0477at 528.095 kb on - strand, within Psest_0477at 528.199 kb on + strand, within Psest_0477at 528.200 kb on - strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.265 kb on + strand, within Psest_0477at 528.266 kb on - strand, within Psest_0477at 528.514 kb on + strandat 528.515 kb on - strandat 528.610 kb on + strandat 528.610 kb on + strandat 528.610 kb on + strandat 528.610 kb on + strandat 528.610 kb on + strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.611 kb on - strandat 528.623 kb on - strandat 528.690 kb on - strandat 528.690 kb on - strandat 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.984 kb on - strand, within Psest_0478at 528.984 kb on - strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.094 kb on + strand, within Psest_0478at 529.094 kb on + strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.139 kb on + strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.782 kb on + strand, within Psest_0479at 529.803 kb on + strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 530.012 kb on + strand, within Psest_0479at 530.012 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.119 kb on + strand, within Psest_0479at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480

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Per-strain Table

Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol%
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527,701 + Psest_0477 0.51 -2.3
527,701 + Psest_0477 0.51 -0.8
527,701 + Psest_0477 0.51 -2.7
527,701 + Psest_0477 0.51 -1.8
527,702 - Psest_0477 0.51 -1.7
527,702 - Psest_0477 0.51 -1.2
527,702 - Psest_0477 0.51 -3.6
527,702 - Psest_0477 0.51 -2.0
527,702 - Psest_0477 0.51 -2.7
527,702 - Psest_0477 0.51 -3.1
527,724 - Psest_0477 0.52 -2.2
527,735 - Psest_0477 0.53 -1.9
527,872 + Psest_0477 0.60 -1.2
528,094 + Psest_0477 0.72 -2.1
528,094 + Psest_0477 0.72 -2.6
528,094 + Psest_0477 0.72 -1.6
528,094 + Psest_0477 0.72 -0.9
528,094 + Psest_0477 0.72 -2.1
528,094 + Psest_0477 0.72 -2.0
528,095 - Psest_0477 0.72 -1.6
528,199 + Psest_0477 0.77 -2.6
528,200 - Psest_0477 0.77 -2.2
528,265 + Psest_0477 0.81 -0.5
528,265 + Psest_0477 0.81 -2.0
528,265 + Psest_0477 0.81 -2.6
528,265 + Psest_0477 0.81 -1.0
528,265 + Psest_0477 0.81 +0.2
528,265 + Psest_0477 0.81 -1.1
528,265 + Psest_0477 0.81 -2.5
528,266 - Psest_0477 0.81 -1.6
528,514 + +0.5
528,515 - +0.8
528,610 + -0.3
528,610 + +0.9
528,610 + +0.2
528,610 + +1.0
528,610 + +0.6
528,611 - -0.7
528,611 - +0.2
528,611 - -0.7
528,611 - -0.2
528,611 - -0.8
528,611 - -0.4
528,611 - -0.8
528,611 - -1.0
528,623 - -0.2
528,690 - +0.5
528,690 - +1.2
528,770 + Psest_0478 0.12 +0.9
528,770 + Psest_0478 0.12 -0.1
528,770 + Psest_0478 0.12 -0.9
528,770 + Psest_0478 0.12 -0.9
528,771 - Psest_0478 0.12 +0.5
528,771 - Psest_0478 0.12 +0.4
528,771 - Psest_0478 0.12 +0.2
528,771 - Psest_0478 0.12 +0.7
528,771 - Psest_0478 0.12 +1.9
528,779 + Psest_0478 0.13 -0.6
528,779 + Psest_0478 0.13 +0.6
528,779 + Psest_0478 0.13 -0.5
528,779 + Psest_0478 0.13 -0.3
528,780 - Psest_0478 0.13 +2.3
528,780 - Psest_0478 0.13 -0.1
528,780 - Psest_0478 0.13 +1.5
528,780 - Psest_0478 0.13 +1.1
528,983 + Psest_0478 0.41 -0.1
528,983 + Psest_0478 0.41 +0.3
528,983 + Psest_0478 0.41 +0.3
528,984 - Psest_0478 0.41 +0.7
528,984 - Psest_0478 0.41 +0.2
529,028 + Psest_0478 0.47 -2.0
529,028 + Psest_0478 0.47 -0.3
529,028 + Psest_0478 0.47 -0.1
529,028 + Psest_0478 0.47 +0.3
529,028 + Psest_0478 0.47 -1.1
529,028 + Psest_0478 0.47 +0.8
529,028 + Psest_0478 0.47 -0.6
529,029 - Psest_0478 0.47 -0.6
529,029 - Psest_0478 0.47 +0.3
529,029 - Psest_0478 0.47 -0.0
529,029 - Psest_0478 0.47 -1.2
529,029 - Psest_0478 0.47 +0.9
529,034 + Psest_0478 0.48 -0.3
529,034 + Psest_0478 0.48 +0.0
529,034 + Psest_0478 0.48 -1.4
529,034 + Psest_0478 0.48 -0.2
529,034 + Psest_0478 0.48 +0.7
529,035 - Psest_0478 0.48 -1.6
529,035 - Psest_0478 0.48 -0.3
529,035 - Psest_0478 0.48 +1.1
529,035 - Psest_0478 0.48 +0.3
529,094 + Psest_0478 0.56 -0.1
529,094 + Psest_0478 0.56 -0.6
529,095 - Psest_0478 0.56 -0.6
529,095 - Psest_0478 0.56 -0.1
529,095 - Psest_0478 0.56 +0.5
529,139 + Psest_0478 0.62 +0.1
529,140 - Psest_0478 0.62 +0.6
529,140 - Psest_0478 0.62 +0.1
529,140 - Psest_0478 0.62 +0.7
529,403 + -0.1
529,403 + -0.1
529,403 + -0.3
529,403 + +0.4
529,403 + -0.1
529,403 + -0.5
529,403 + -1.4
529,403 + -0.5
529,403 + -0.6
529,404 - +0.3
529,404 - +0.1
529,404 - -0.8
529,404 - -0.2
529,404 - -0.5
529,404 - -0.5
529,404 - +0.5
529,782 + Psest_0479 0.23 -1.3
529,803 + Psest_0479 0.27 +0.4
529,804 - Psest_0479 0.27 +0.5
529,804 - Psest_0479 0.27 +0.2
529,804 - Psest_0479 0.27 -0.2
530,012 + Psest_0479 0.61 +1.2
530,012 + Psest_0479 0.61 +0.8
530,048 + Psest_0479 0.67 +0.7
530,048 + Psest_0479 0.67 +1.3
530,048 + Psest_0479 0.67 -0.1
530,048 + Psest_0479 0.67 +0.6
530,048 + Psest_0479 0.67 +0.7
530,048 + Psest_0479 0.67 +0.6
530,049 - Psest_0479 0.67 +0.0
530,049 - Psest_0479 0.67 +1.3
530,049 - Psest_0479 0.67 +0.5
530,049 - Psest_0479 0.67 +0.0
530,049 - Psest_0479 0.67 -0.8
530,049 - Psest_0479 0.67 -0.7
530,054 + Psest_0479 0.67 -0.0
530,054 + Psest_0479 0.67 +0.3
530,054 + Psest_0479 0.67 +0.6
530,054 + Psest_0479 0.67 +0.4
530,054 + Psest_0479 0.67 +0.1
530,054 + Psest_0479 0.67 -0.2
530,054 + Psest_0479 0.67 +0.3
530,055 - Psest_0479 0.68 +0.4
530,055 - Psest_0479 0.68 -0.4
530,055 - Psest_0479 0.68 +0.4
530,055 - Psest_0479 0.68 -0.6
530,055 - Psest_0479 0.68 -1.5
530,055 - Psest_0479 0.68 +0.5
530,055 - Psest_0479 0.68 -0.6
530,055 - Psest_0479 0.68 +0.2
530,055 - Psest_0479 0.68 -1.2
530,055 - Psest_0479 0.68 +1.7
530,055 - Psest_0479 0.68 -0.6
530,055 - Psest_0479 0.68 -1.0
530,055 - Psest_0479 0.68 +0.1
530,055 - Psest_0479 0.68 +0.1
530,119 + Psest_0479 0.78 +0.5
530,317 + Psest_0480 0.15 -0.9
530,317 + Psest_0480 0.15 +0.4
530,317 + Psest_0480 0.15 -0.1
530,317 + Psest_0480 0.15 +0.3
530,317 + Psest_0480 0.15 -0.1
530,317 + Psest_0480 0.15 +0.5
530,318 - Psest_0480 0.15 +1.2
530,318 - Psest_0480 0.15 +0.3
530,318 - Psest_0480 0.15 -1.8
530,318 - Psest_0480 0.15 -0.0
530,318 - Psest_0480 0.15 -0.9
530,321 + Psest_0480 0.16 -0.1
530,321 + Psest_0480 0.16 -1.8
530,321 + Psest_0480 0.16 -0.6
530,322 - Psest_0480 0.16 -0.6
530,322 - Psest_0480 0.16 -1.0
530,322 - Psest_0480 0.16 -0.2

Or see this region's nucleotide sequence