Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4098

Experiment: Def methylglyoxal 0.01 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4097 and Psest_4098 are separated by 251 nucleotidesPsest_4098 and Psest_4099 are separated by 56 nucleotides Psest_4097: Psest_4097 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 4,273,627 to 4,276,479 _4097 Psest_4098: Psest_4098 - Superfamily I DNA and RNA helicases, at 4,276,731 to 4,278,920 _4098 Psest_4099: Psest_4099 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 4,278,977 to 4,280,080 _4099 Position (kb) 4276 4277 4278 4279Strain fitness (log2 ratio) -2 -1 0 1 2at 4276.040 kb on + strand, within Psest_4097at 4276.082 kb on + strand, within Psest_4097at 4276.082 kb on + strand, within Psest_4097at 4276.083 kb on - strand, within Psest_4097at 4276.136 kb on + strand, within Psest_4097at 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.288 kb on + strandat 4276.289 kb on - strandat 4276.289 kb on - strandat 4276.355 kb on - strandat 4276.380 kb on - strandat 4276.393 kb on - strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.491 kb on + strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.492 kb on - strandat 4276.719 kb on + strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.720 kb on - strandat 4276.955 kb on + strand, within Psest_4098at 4276.956 kb on - strand, within Psest_4098at 4277.257 kb on - strand, within Psest_4098at 4277.266 kb on - strand, within Psest_4098at 4277.266 kb on - strand, within Psest_4098at 4277.497 kb on - strand, within Psest_4098at 4277.584 kb on - strand, within Psest_4098at 4278.300 kb on + strand, within Psest_4098at 4278.300 kb on + strand, within Psest_4098at 4278.541 kb on - strand, within Psest_4098at 4278.618 kb on + strand, within Psest_4098at 4278.618 kb on + strand, within Psest_4098at 4278.619 kb on - strand, within Psest_4098at 4278.947 kb on - strandat 4278.947 kb on - strandat 4279.103 kb on + strand, within Psest_4099at 4279.103 kb on + strand, within Psest_4099at 4279.103 kb on + strand, within Psest_4099at 4279.104 kb on - strand, within Psest_4099at 4279.139 kb on + strand, within Psest_4099at 4279.220 kb on + strand, within Psest_4099at 4279.220 kb on + strand, within Psest_4099at 4279.221 kb on - strand, within Psest_4099at 4279.221 kb on - strand, within Psest_4099at 4279.221 kb on - strand, within Psest_4099at 4279.304 kb on + strand, within Psest_4099at 4279.305 kb on - strand, within Psest_4099at 4279.307 kb on + strand, within Psest_4099at 4279.308 kb on - strand, within Psest_4099at 4279.427 kb on + strand, within Psest_4099at 4279.427 kb on + strand, within Psest_4099at 4279.428 kb on - strand, within Psest_4099at 4279.491 kb on - strand, within Psest_4099at 4279.540 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099

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Per-strain Table

Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol%
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4,276,040 + Psest_4097 0.85 -0.8
4,276,082 + Psest_4097 0.86 -0.5
4,276,082 + Psest_4097 0.86 -1.1
4,276,083 - Psest_4097 0.86 -0.1
4,276,136 + Psest_4097 0.88 -0.1
4,276,288 + -1.5
4,276,288 + -0.8
4,276,288 + -0.4
4,276,288 + -0.8
4,276,288 + -2.0
4,276,289 - -2.2
4,276,289 - -0.1
4,276,355 - +0.1
4,276,380 - -0.0
4,276,393 - +0.3
4,276,491 + -0.3
4,276,491 + -1.0
4,276,491 + -0.6
4,276,491 + +0.0
4,276,491 + -0.4
4,276,491 + -1.1
4,276,491 + -0.2
4,276,491 + +1.2
4,276,492 - -0.1
4,276,492 - +0.4
4,276,492 - -0.3
4,276,492 - +0.2
4,276,492 - +0.3
4,276,492 - -0.9
4,276,492 - +0.4
4,276,492 - +0.4
4,276,492 - -0.0
4,276,492 - +1.4
4,276,492 - -0.2
4,276,492 - +0.8
4,276,492 - +0.1
4,276,492 - +0.1
4,276,719 + -0.1
4,276,720 - +0.4
4,276,720 - +1.0
4,276,720 - +0.4
4,276,720 - +0.4
4,276,720 - -0.4
4,276,955 + Psest_4098 0.10 -0.4
4,276,956 - Psest_4098 0.10 -0.5
4,277,257 - Psest_4098 0.24 -1.0
4,277,266 - Psest_4098 0.24 -2.5
4,277,266 - Psest_4098 0.24 -1.6
4,277,497 - Psest_4098 0.35 -1.4
4,277,584 - Psest_4098 0.39 -1.0
4,278,300 + Psest_4098 0.72 -1.5
4,278,300 + Psest_4098 0.72 -2.5
4,278,541 - Psest_4098 0.83 +0.2
4,278,618 + Psest_4098 0.86 -1.0
4,278,618 + Psest_4098 0.86 -2.3
4,278,619 - Psest_4098 0.86 -1.1
4,278,947 - +0.9
4,278,947 - -0.5
4,279,103 + Psest_4099 0.11 -1.2
4,279,103 + Psest_4099 0.11 -0.6
4,279,103 + Psest_4099 0.11 -0.8
4,279,104 - Psest_4099 0.12 +0.0
4,279,139 + Psest_4099 0.15 +0.1
4,279,220 + Psest_4099 0.22 -0.4
4,279,220 + Psest_4099 0.22 +0.6
4,279,221 - Psest_4099 0.22 -0.2
4,279,221 - Psest_4099 0.22 -1.6
4,279,221 - Psest_4099 0.22 -0.9
4,279,304 + Psest_4099 0.30 +1.1
4,279,305 - Psest_4099 0.30 +0.8
4,279,307 + Psest_4099 0.30 +1.2
4,279,308 - Psest_4099 0.30 -0.3
4,279,427 + Psest_4099 0.41 -0.1
4,279,427 + Psest_4099 0.41 +1.2
4,279,428 - Psest_4099 0.41 -0.0
4,279,491 - Psest_4099 0.47 +0.6
4,279,540 + Psest_4099 0.51 -0.1
4,279,703 + Psest_4099 0.66 +0.6
4,279,703 + Psest_4099 0.66 -1.6
4,279,703 + Psest_4099 0.66 +0.6
4,279,703 + Psest_4099 0.66 -2.1
4,279,703 + Psest_4099 0.66 -0.6
4,279,703 + Psest_4099 0.66 +0.5
4,279,703 + Psest_4099 0.66 +0.8
4,279,703 + Psest_4099 0.66 -0.1
4,279,703 + Psest_4099 0.66 +0.3
4,279,703 + Psest_4099 0.66 -0.7
4,279,703 + Psest_4099 0.66 +0.5
4,279,703 + Psest_4099 0.66 -1.4
4,279,703 + Psest_4099 0.66 +0.0
4,279,703 + Psest_4099 0.66 +0.2
4,279,704 - Psest_4099 0.66 -0.3
4,279,704 - Psest_4099 0.66 +1.5
4,279,704 - Psest_4099 0.66 -1.1
4,279,704 - Psest_4099 0.66 +0.1
4,279,704 - Psest_4099 0.66 -0.1
4,279,706 + Psest_4099 0.66 -0.3
4,279,706 + Psest_4099 0.66 -0.0
4,279,706 + Psest_4099 0.66 +0.9
4,279,706 + Psest_4099 0.66 +0.6
4,279,707 - Psest_4099 0.66 -0.3
4,279,707 - Psest_4099 0.66 -1.3
4,279,707 - Psest_4099 0.66 +0.1
4,279,707 - Psest_4099 0.66 -0.9
4,279,707 - Psest_4099 0.66 +0.6
4,279,707 - Psest_4099 0.66 -0.2
4,279,707 - Psest_4099 0.66 +0.5
4,279,707 - Psest_4099 0.66 -0.8
4,279,707 - Psest_4099 0.66 -0.1
4,279,707 - Psest_4099 0.66 +0.1
4,279,709 + Psest_4099 0.66 +0.8
4,279,709 + Psest_4099 0.66 -0.5
4,279,709 + Psest_4099 0.66 +0.2
4,279,709 + Psest_4099 0.66 +1.0
4,279,709 + Psest_4099 0.66 -0.2
4,279,709 + Psest_4099 0.66 +0.1
4,279,709 + Psest_4099 0.66 +0.1
4,279,709 + Psest_4099 0.66 -0.5
4,279,710 - Psest_4099 0.66 +1.4
4,279,710 - Psest_4099 0.66 -0.0
4,279,710 - Psest_4099 0.66 +1.6
4,279,710 - Psest_4099 0.66 +0.5
4,279,710 - Psest_4099 0.66 -0.9
4,279,710 - Psest_4099 0.66 +0.2
4,279,710 - Psest_4099 0.66 +0.4
4,279,710 - Psest_4099 0.66 -1.5
4,279,710 - Psest_4099 0.66 -0.1
4,279,710 - Psest_4099 0.66 -0.3
4,279,847 + Psest_4099 0.79 +0.2
4,279,847 + Psest_4099 0.79 +1.1
4,279,847 + Psest_4099 0.79 -0.6
4,279,847 + Psest_4099 0.79 -1.6
4,279,847 + Psest_4099 0.79 +2.2
4,279,847 + Psest_4099 0.79 +0.5
4,279,847 + Psest_4099 0.79 -0.5
4,279,847 + Psest_4099 0.79 +0.7
4,279,847 + Psest_4099 0.79 -1.5
4,279,847 + Psest_4099 0.79 -0.1
4,279,847 + Psest_4099 0.79 +0.8
4,279,847 + Psest_4099 0.79 +0.5
4,279,847 + Psest_4099 0.79 +0.8
4,279,847 + Psest_4099 0.79 -1.1
4,279,847 + Psest_4099 0.79 -0.1
4,279,847 + Psest_4099 0.79 -0.2
4,279,847 + Psest_4099 0.79 -0.4
4,279,847 + Psest_4099 0.79 +0.8
4,279,848 - Psest_4099 0.79 +0.4
4,279,848 - Psest_4099 0.79 -0.1
4,279,848 - Psest_4099 0.79 +1.5
4,279,848 - Psest_4099 0.79 +0.1
4,279,848 - Psest_4099 0.79 +0.3
4,279,848 - Psest_4099 0.79 +0.1
4,279,848 - Psest_4099 0.79 +0.1
4,279,848 - Psest_4099 0.79 -0.6
4,279,848 - Psest_4099 0.79 +1.0
4,279,848 - Psest_4099 0.79 +1.6
4,279,848 - Psest_4099 0.79 +0.6
4,279,848 - Psest_4099 0.79 +0.2
4,279,853 + Psest_4099 0.79 -1.1
4,279,853 + Psest_4099 0.79 +1.2
4,279,853 + Psest_4099 0.79 +0.2
4,279,853 + Psest_4099 0.79 +1.6
4,279,853 + Psest_4099 0.79 -1.2
4,279,853 + Psest_4099 0.79 -0.4
4,279,853 + Psest_4099 0.79 +1.2
4,279,854 - Psest_4099 0.79 -0.4
4,279,854 - Psest_4099 0.79 -0.5
4,279,854 - Psest_4099 0.79 -0.0
4,279,854 - Psest_4099 0.79 -0.7

Or see this region's nucleotide sequence