Experiment: Def methylglyoxal 0.01 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3578 and Psest_3579 are separated by 194 nucleotides Psest_3579 and Psest_3580 are separated by 45 nucleotides Psest_3580 and Psest_3581 are separated by 22 nucleotides Psest_3581 and Psest_3582 are separated by 17 nucleotides
Psest_3578: Psest_3578 - Catalase, at 3,754,471 to 3,755,931
_3578
Psest_3579: Psest_3579 - ribosomal protein L17, at 3,756,126 to 3,756,512
_3579
Psest_3580: Psest_3580 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 3,756,558 to 3,757,559
_3580
Psest_3581: Psest_3581 - ribosomal protein S4, bacterial/organelle type, at 3,757,582 to 3,758,202
_3581
Psest_3582: Psest_3582 - 30S ribosomal protein S11, at 3,758,220 to 3,758,609
_3582
Position (kb)
3756
3757
3758 Strain fitness (log2 ratio)
-1
0
1 at 3755.582 kb on + strand, within Psest_3578 at 3755.827 kb on + strand at 3755.827 kb on + strand at 3755.828 kb on - strand at 3755.828 kb on - strand at 3755.973 kb on + strand at 3755.973 kb on + strand at 3755.974 kb on - strand at 3755.977 kb on + strand at 3756.001 kb on - strand at 3756.047 kb on - strand at 3756.048 kb on + strand at 3756.048 kb on + strand at 3756.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol% remove 3,755,582 + Psest_3578 0.76 -0.2 3,755,827 + -1.4 3,755,827 + +0.5 3,755,828 - +0.2 3,755,828 - +0.1 3,755,973 + -0.6 3,755,973 + -0.4 3,755,974 - -0.6 3,755,977 + +0.9 3,756,001 - -0.3 3,756,047 - +0.1 3,756,048 + +0.7 3,756,048 + +1.0 3,756,048 + -0.4
Or see this region's nucleotide sequence