Experiment: Def methylglyoxal 0.01 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3570 and Psest_3571 are separated by 183 nucleotides Psest_3571 and Psest_3572 are separated by 71 nucleotides Psest_3572 and Psest_3573 overlap by 8 nucleotides Psest_3573 and Psest_3574 are separated by 10 nucleotides
Psest_3570: Psest_3570 - Protein of unknown function (DUF3450)., at 3,744,508 to 3,745,293
_3570
Psest_3571: Psest_3571 - Outer membrane protein W, at 3,745,477 to 3,746,154
_3571
Psest_3572: Psest_3572 - Nucleoside-diphosphate-sugar epimerases, at 3,746,226 to 3,747,149
_3572
Psest_3573: Psest_3573 - dTDP-4-dehydrorhamnose reductase, at 3,747,142 to 3,748,026
_3573
Psest_3574: Psest_3574 - single stranded DNA-binding protein (ssb), at 3,748,037 to 3,748,531
_3574
Position (kb)
3746
3747
3748 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3745.603 kb on - strand, within Psest_3571 at 3745.603 kb on - strand, within Psest_3571 at 3745.612 kb on - strand, within Psest_3571 at 3745.612 kb on - strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.724 kb on + strand, within Psest_3571 at 3745.725 kb on - strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.849 kb on - strand, within Psest_3571 at 3745.888 kb on - strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.988 kb on + strand, within Psest_3571 at 3745.989 kb on - strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3746.000 kb on - strand, within Psest_3571 at 3746.000 kb on - strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.042 kb on - strand, within Psest_3571 at 3746.112 kb on - strand at 3746.125 kb on + strand at 3746.125 kb on + strand at 3746.125 kb on + strand at 3746.126 kb on - strand at 3746.126 kb on - strand at 3746.196 kb on + strand at 3746.248 kb on - strand at 3747.156 kb on - strand at 3747.396 kb on - strand, within Psest_3573 at 3747.396 kb on - strand, within Psest_3573 at 3747.396 kb on - strand, within Psest_3573 at 3747.608 kb on - strand, within Psest_3573 at 3747.840 kb on - strand, within Psest_3573 at 3747.840 kb on - strand, within Psest_3573 at 3747.843 kb on - strand, within Psest_3573 at 3747.843 kb on - strand, within Psest_3573 at 3747.843 kb on - strand, within Psest_3573 at 3747.846 kb on - strand, within Psest_3573 at 3747.846 kb on - strand, within Psest_3573 at 3747.846 kb on - strand, within Psest_3573 at 3748.039 kb on - strand at 3748.039 kb on - strand at 3748.039 kb on - strand at 3748.039 kb on - strand at 3748.039 kb on - strand at 3748.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol% remove 3,745,603 - Psest_3571 0.19 +0.0 3,745,603 - Psest_3571 0.19 +0.6 3,745,612 - Psest_3571 0.20 +1.1 3,745,612 - Psest_3571 0.20 +0.7 3,745,693 + Psest_3571 0.32 +1.0 3,745,693 + Psest_3571 0.32 +0.8 3,745,693 + Psest_3571 0.32 -2.0 3,745,724 + Psest_3571 0.36 +0.2 3,745,725 - Psest_3571 0.37 +0.8 3,745,834 + Psest_3571 0.53 +1.4 3,745,834 + Psest_3571 0.53 +0.5 3,745,834 + Psest_3571 0.53 +0.8 3,745,834 + Psest_3571 0.53 -1.2 3,745,834 + Psest_3571 0.53 +0.8 3,745,834 + Psest_3571 0.53 +1.8 3,745,834 + Psest_3571 0.53 +1.4 3,745,834 + Psest_3571 0.53 +1.0 3,745,835 - Psest_3571 0.53 +0.4 3,745,835 - Psest_3571 0.53 +0.8 3,745,835 - Psest_3571 0.53 +0.8 3,745,835 - Psest_3571 0.53 +0.3 3,745,835 - Psest_3571 0.53 +1.4 3,745,849 - Psest_3571 0.55 +0.8 3,745,888 - Psest_3571 0.61 +2.5 3,745,891 + Psest_3571 0.61 +1.3 3,745,891 + Psest_3571 0.61 +1.1 3,745,891 + Psest_3571 0.61 +0.6 3,745,892 - Psest_3571 0.61 +1.2 3,745,892 - Psest_3571 0.61 +2.1 3,745,892 - Psest_3571 0.61 -0.3 3,745,988 + Psest_3571 0.75 +1.7 3,745,989 - Psest_3571 0.76 +0.9 3,745,999 + Psest_3571 0.77 +1.0 3,745,999 + Psest_3571 0.77 +1.6 3,745,999 + Psest_3571 0.77 +1.8 3,745,999 + Psest_3571 0.77 +1.2 3,745,999 + Psest_3571 0.77 +1.7 3,745,999 + Psest_3571 0.77 +1.5 3,746,000 - Psest_3571 0.77 -0.3 3,746,000 - Psest_3571 0.77 +0.9 3,746,041 + Psest_3571 0.83 +1.6 3,746,041 + Psest_3571 0.83 +1.8 3,746,041 + Psest_3571 0.83 +0.1 3,746,041 + Psest_3571 0.83 +0.8 3,746,041 + Psest_3571 0.83 +1.8 3,746,042 - Psest_3571 0.83 +1.3 3,746,112 - +1.3 3,746,125 + +1.7 3,746,125 + +1.7 3,746,125 + +0.9 3,746,126 - -0.2 3,746,126 - +0.9 3,746,196 + -0.2 3,746,248 - -0.4 3,747,156 - +0.2 3,747,396 - Psest_3573 0.29 -2.0 3,747,396 - Psest_3573 0.29 -1.1 3,747,396 - Psest_3573 0.29 -1.9 3,747,608 - Psest_3573 0.53 -1.7 3,747,840 - Psest_3573 0.79 -0.8 3,747,840 - Psest_3573 0.79 -2.0 3,747,843 - Psest_3573 0.79 -1.5 3,747,843 - Psest_3573 0.79 -1.4 3,747,843 - Psest_3573 0.79 -1.9 3,747,846 - Psest_3573 0.80 -1.5 3,747,846 - Psest_3573 0.80 -1.5 3,747,846 - Psest_3573 0.80 -1.3 3,748,039 - -1.0 3,748,039 - +0.5 3,748,039 - +0.5 3,748,039 - -0.0 3,748,039 - -0.5 3,748,039 - -0.3
Or see this region's nucleotide sequence