Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0306

Experiment: Def methylglyoxal 0.01 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0304 and Psest_0305 are separated by 24 nucleotidesPsest_0305 and Psest_0306 are separated by 90 nucleotidesPsest_0306 and Psest_0307 are separated by 161 nucleotidesPsest_0307 and Psest_0308 are separated by 25 nucleotides Psest_0304: Psest_0304 - Chemotaxis signal transduction protein, at 324,055 to 324,525 _0304 Psest_0305: Psest_0305 - RNA methyltransferase, RsmE family, at 324,550 to 325,266 _0305 Psest_0306: Psest_0306 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 325,357 to 326,760 _0306 Psest_0307: Psest_0307 - Cytochrome B561, at 326,922 to 327,476 _0307 Psest_0308: Psest_0308 - Uncharacterized conserved protein, at 327,502 to 328,077 _0308 Position (kb) 325 326 327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.191 kb on - strand, within Psest_0305at 325.191 kb on - strand, within Psest_0305at 325.275 kb on + strandat 325.276 kb on - strandat 325.276 kb on - strandat 325.276 kb on - strandat 325.303 kb on + strandat 325.331 kb on + strandat 325.331 kb on + strandat 325.344 kb on + strandat 325.344 kb on + strandat 325.345 kb on - strandat 325.345 kb on - strandat 325.419 kb on + strandat 325.484 kb on + strandat 325.499 kb on + strand, within Psest_0306at 325.499 kb on + strand, within Psest_0306at 325.499 kb on + strand, within Psest_0306at 325.500 kb on - strand, within Psest_0306at 325.500 kb on - strand, within Psest_0306at 325.553 kb on + strand, within Psest_0306at 325.554 kb on - strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.841 kb on + strand, within Psest_0306at 325.841 kb on + strand, within Psest_0306at 325.842 kb on - strand, within Psest_0306at 325.853 kb on + strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 326.018 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.316 kb on - strand, within Psest_0306at 326.316 kb on - strand, within Psest_0306at 326.395 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.485 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.582 kb on - strand, within Psest_0306at 326.582 kb on - strand, within Psest_0306at 326.791 kb on + strandat 326.896 kb on - strandat 326.933 kb on + strandat 326.934 kb on - strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.950 kb on - strandat 326.950 kb on - strandat 327.018 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.040 kb on - strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.043 kb on - strand, within Psest_0307at 327.134 kb on + strand, within Psest_0307at 327.134 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.360 kb on + strand, within Psest_0307at 327.361 kb on - strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.634 kb on + strand, within Psest_0308at 327.634 kb on + strand, within Psest_0308

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Per-strain Table

Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol%
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325,053 + Psest_0305 0.70 +0.7
325,053 + Psest_0305 0.70 +0.1
325,053 + Psest_0305 0.70 +1.3
325,053 + Psest_0305 0.70 +0.1
325,054 - Psest_0305 0.70 -0.7
325,054 - Psest_0305 0.70 -0.5
325,054 - Psest_0305 0.70 -1.1
325,054 - Psest_0305 0.70 -0.2
325,190 + Psest_0305 0.89 -1.0
325,190 + Psest_0305 0.89 -0.6
325,190 + Psest_0305 0.89 -0.1
325,190 + Psest_0305 0.89 -0.6
325,191 - Psest_0305 0.89 +0.2
325,191 - Psest_0305 0.89 +0.2
325,275 + +0.8
325,276 - -0.8
325,276 - +1.2
325,276 - +0.2
325,303 + +0.1
325,331 + +0.2
325,331 + -2.2
325,344 + -0.5
325,344 + +0.7
325,345 - -0.1
325,345 - +0.6
325,419 + -1.5
325,484 + -1.3
325,499 + Psest_0306 0.10 -2.7
325,499 + Psest_0306 0.10 -1.5
325,499 + Psest_0306 0.10 -1.8
325,500 - Psest_0306 0.10 -1.9
325,500 - Psest_0306 0.10 -3.3
325,553 + Psest_0306 0.14 -1.9
325,554 - Psest_0306 0.14 -2.4
325,796 + Psest_0306 0.31 -2.0
325,796 + Psest_0306 0.31 -3.3
325,796 + Psest_0306 0.31 -0.9
325,796 + Psest_0306 0.31 -2.0
325,797 - Psest_0306 0.31 -2.9
325,797 - Psest_0306 0.31 -2.5
325,797 - Psest_0306 0.31 -2.0
325,797 - Psest_0306 0.31 -0.5
325,841 + Psest_0306 0.34 -1.5
325,841 + Psest_0306 0.34 -1.2
325,842 - Psest_0306 0.35 -2.1
325,853 + Psest_0306 0.35 -2.9
325,854 - Psest_0306 0.35 -1.1
325,854 - Psest_0306 0.35 -2.5
325,854 - Psest_0306 0.35 -3.5
325,854 - Psest_0306 0.35 -2.0
326,018 + Psest_0306 0.47 -2.6
326,063 + Psest_0306 0.50 -3.8
326,063 + Psest_0306 0.50 -2.4
326,063 + Psest_0306 0.50 -2.1
326,063 + Psest_0306 0.50 -1.9
326,063 + Psest_0306 0.50 -1.9
326,063 + Psest_0306 0.50 -1.8
326,063 + Psest_0306 0.50 -2.6
326,064 - Psest_0306 0.50 -2.1
326,064 - Psest_0306 0.50 -1.9
326,064 - Psest_0306 0.50 -2.8
326,064 - Psest_0306 0.50 -1.1
326,064 - Psest_0306 0.50 -3.8
326,064 - Psest_0306 0.50 -2.9
326,064 - Psest_0306 0.50 -1.3
326,255 + Psest_0306 0.64 -1.9
326,255 + Psest_0306 0.64 -2.1
326,255 + Psest_0306 0.64 -1.7
326,255 + Psest_0306 0.64 -0.9
326,255 + Psest_0306 0.64 -3.3
326,255 + Psest_0306 0.64 -1.3
326,255 + Psest_0306 0.64 -3.5
326,255 + Psest_0306 0.64 -1.9
326,256 - Psest_0306 0.64 -3.2
326,256 - Psest_0306 0.64 -3.8
326,256 - Psest_0306 0.64 -3.5
326,256 - Psest_0306 0.64 -2.7
326,256 - Psest_0306 0.64 -2.4
326,256 - Psest_0306 0.64 -2.5
326,256 - Psest_0306 0.64 -3.1
326,256 - Psest_0306 0.64 -0.3
326,316 - Psest_0306 0.68 -3.8
326,316 - Psest_0306 0.68 -1.8
326,395 + Psest_0306 0.74 -2.2
326,426 + Psest_0306 0.76 -2.2
326,426 + Psest_0306 0.76 -1.3
326,426 + Psest_0306 0.76 -3.4
326,426 + Psest_0306 0.76 -4.3
326,426 + Psest_0306 0.76 -2.4
326,426 + Psest_0306 0.76 -2.7
326,426 + Psest_0306 0.76 -1.7
326,426 + Psest_0306 0.76 -2.7
326,427 - Psest_0306 0.76 -2.8
326,427 - Psest_0306 0.76 -3.4
326,427 - Psest_0306 0.76 -3.4
326,427 - Psest_0306 0.76 -2.2
326,485 + Psest_0306 0.80 -2.9
326,533 + Psest_0306 0.84 -1.7
326,533 + Psest_0306 0.84 -3.5
326,533 + Psest_0306 0.84 -1.7
326,533 + Psest_0306 0.84 -4.4
326,533 + Psest_0306 0.84 -1.1
326,533 + Psest_0306 0.84 -3.6
326,533 + Psest_0306 0.84 -4.0
326,533 + Psest_0306 0.84 -3.5
326,533 + Psest_0306 0.84 -4.4
326,534 - Psest_0306 0.84 -1.8
326,534 - Psest_0306 0.84 -2.1
326,534 - Psest_0306 0.84 -2.7
326,534 - Psest_0306 0.84 -2.5
326,581 + Psest_0306 0.87 -3.0
326,581 + Psest_0306 0.87 -3.8
326,581 + Psest_0306 0.87 -3.3
326,581 + Psest_0306 0.87 -3.4
326,582 - Psest_0306 0.87 -3.2
326,582 - Psest_0306 0.87 -2.6
326,791 + +0.2
326,896 - -0.2
326,933 + -1.0
326,934 - -0.7
326,949 + +0.2
326,949 + +0.3
326,949 + -0.6
326,949 + +0.3
326,950 - +0.1
326,950 - -0.6
327,018 + Psest_0307 0.17 -0.7
327,039 + Psest_0307 0.21 +0.5
327,039 + Psest_0307 0.21 -0.3
327,039 + Psest_0307 0.21 -0.6
327,039 + Psest_0307 0.21 -0.2
327,039 + Psest_0307 0.21 -0.3
327,039 + Psest_0307 0.21 -0.2
327,040 - Psest_0307 0.21 +0.5
327,042 + Psest_0307 0.22 +0.3
327,042 + Psest_0307 0.22 +0.2
327,042 + Psest_0307 0.22 -1.7
327,043 - Psest_0307 0.22 +0.1
327,134 + Psest_0307 0.38 +0.4
327,134 + Psest_0307 0.38 +0.7
327,213 + Psest_0307 0.52 -0.2
327,213 + Psest_0307 0.52 +0.2
327,213 + Psest_0307 0.52 +0.1
327,213 + Psest_0307 0.52 -0.4
327,360 + Psest_0307 0.79 +0.1
327,361 - Psest_0307 0.79 +0.3
327,394 + Psest_0307 0.85 +0.5
327,394 + Psest_0307 0.85 -0.2
327,394 + Psest_0307 0.85 -0.3
327,394 + Psest_0307 0.85 +1.4
327,394 + Psest_0307 0.85 +0.6
327,394 + Psest_0307 0.85 +0.2
327,394 + Psest_0307 0.85 -0.9
327,394 + Psest_0307 0.85 +0.8
327,395 - Psest_0307 0.85 -1.2
327,395 - Psest_0307 0.85 +0.1
327,395 - Psest_0307 0.85 -0.2
327,395 - Psest_0307 0.85 +0.6
327,395 - Psest_0307 0.85 +0.1
327,395 - Psest_0307 0.85 -0.5
327,395 - Psest_0307 0.85 -0.1
327,634 + Psest_0308 0.23 +0.7
327,634 + Psest_0308 0.23 +0.6

Or see this region's nucleotide sequence