Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2432

Experiment: Def methylglyoxal 0.01 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2431 and Psest_2432 are separated by 182 nucleotidesPsest_2432 and Psest_2433 are separated by 77 nucleotides Psest_2431: Psest_2431 - Transglycosylase., at 2,595,358 to 2,598,477 _2431 Psest_2432: Psest_2432 - Uncharacterized protein conserved in bacteria, at 2,598,660 to 2,599,757 _2432 Psest_2433: Psest_2433 - alpha-glucan phosphorylases, at 2,599,835 to 2,602,345 _2433 Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -2 -1 0 1at 2597.737 kb on + strand, within Psest_2431at 2597.737 kb on + strand, within Psest_2431at 2597.738 kb on - strand, within Psest_2431at 2597.814 kb on + strand, within Psest_2431at 2597.969 kb on + strand, within Psest_2431at 2598.271 kb on + strandat 2598.307 kb on + strandat 2598.307 kb on + strandat 2598.307 kb on + strandat 2598.397 kb on + strandat 2598.502 kb on + strandat 2598.590 kb on + strandat 2598.880 kb on - strand, within Psest_2432at 2599.118 kb on + strand, within Psest_2432at 2599.119 kb on - strand, within Psest_2432at 2599.336 kb on + strand, within Psest_2432at 2599.336 kb on + strand, within Psest_2432at 2599.337 kb on - strand, within Psest_2432at 2599.475 kb on + strand, within Psest_2432at 2599.475 kb on + strand, within Psest_2432at 2599.475 kb on + strand, within Psest_2432at 2599.475 kb on + strand, within Psest_2432at 2599.476 kb on - strand, within Psest_2432at 2599.476 kb on - strand, within Psest_2432at 2599.476 kb on - strand, within Psest_2432at 2599.476 kb on - strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.479 kb on + strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.480 kb on - strand, within Psest_2432at 2599.620 kb on + strand, within Psest_2432at 2599.620 kb on + strand, within Psest_2432at 2599.621 kb on - strand, within Psest_2432at 2599.727 kb on - strandat 2599.727 kb on - strandat 2599.779 kb on + strandat 2599.789 kb on + strandat 2599.789 kb on + strandat 2599.789 kb on + strandat 2599.790 kb on - strandat 2599.790 kb on - strandat 2599.790 kb on - strandat 2599.790 kb on - strandat 2599.790 kb on - strandat 2599.804 kb on - strandat 2600.144 kb on + strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.145 kb on - strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.159 kb on + strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.160 kb on - strand, within Psest_2433at 2600.186 kb on + strand, within Psest_2433at 2600.186 kb on + strand, within Psest_2433at 2600.285 kb on + strand, within Psest_2433at 2600.285 kb on + strand, within Psest_2433at 2600.286 kb on - strand, within Psest_2433at 2600.508 kb on + strand, within Psest_2433at 2600.687 kb on - strand, within Psest_2433at 2600.749 kb on + strand, within Psest_2433

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Per-strain Table

Position Strand Gene LocusTag Fraction Def methylglyoxal 0.01 vol%
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2,597,737 + Psest_2431 0.76 -0.1
2,597,737 + Psest_2431 0.76 +0.0
2,597,738 - Psest_2431 0.76 -0.0
2,597,814 + Psest_2431 0.79 +0.3
2,597,969 + Psest_2431 0.84 +0.9
2,598,271 + -0.2
2,598,307 + +0.8
2,598,307 + +0.4
2,598,307 + +0.1
2,598,397 + +0.7
2,598,502 + -0.2
2,598,590 + -0.2
2,598,880 - Psest_2432 0.20 -0.6
2,599,118 + Psest_2432 0.42 +0.6
2,599,119 - Psest_2432 0.42 -0.4
2,599,336 + Psest_2432 0.62 -1.0
2,599,336 + Psest_2432 0.62 +0.1
2,599,337 - Psest_2432 0.62 +0.7
2,599,475 + Psest_2432 0.74 -0.7
2,599,475 + Psest_2432 0.74 -1.8
2,599,475 + Psest_2432 0.74 -0.3
2,599,475 + Psest_2432 0.74 +0.3
2,599,476 - Psest_2432 0.74 +0.5
2,599,476 - Psest_2432 0.74 -0.2
2,599,476 - Psest_2432 0.74 -0.5
2,599,476 - Psest_2432 0.74 -0.6
2,599,479 + Psest_2432 0.75 -0.1
2,599,479 + Psest_2432 0.75 -0.2
2,599,479 + Psest_2432 0.75 -1.0
2,599,479 + Psest_2432 0.75 -0.9
2,599,479 + Psest_2432 0.75 -0.4
2,599,479 + Psest_2432 0.75 -0.4
2,599,479 + Psest_2432 0.75 -0.2
2,599,479 + Psest_2432 0.75 -0.4
2,599,479 + Psest_2432 0.75 +0.0
2,599,479 + Psest_2432 0.75 -1.5
2,599,479 + Psest_2432 0.75 +0.6
2,599,479 + Psest_2432 0.75 -0.4
2,599,479 + Psest_2432 0.75 +0.2
2,599,480 - Psest_2432 0.75 +0.8
2,599,480 - Psest_2432 0.75 -0.1
2,599,480 - Psest_2432 0.75 -0.1
2,599,480 - Psest_2432 0.75 -0.7
2,599,480 - Psest_2432 0.75 -0.3
2,599,480 - Psest_2432 0.75 +0.2
2,599,480 - Psest_2432 0.75 -0.1
2,599,480 - Psest_2432 0.75 -0.4
2,599,480 - Psest_2432 0.75 -1.5
2,599,480 - Psest_2432 0.75 +0.3
2,599,480 - Psest_2432 0.75 -0.9
2,599,480 - Psest_2432 0.75 -0.5
2,599,480 - Psest_2432 0.75 -0.7
2,599,480 - Psest_2432 0.75 -0.7
2,599,480 - Psest_2432 0.75 +0.7
2,599,480 - Psest_2432 0.75 -1.0
2,599,480 - Psest_2432 0.75 -1.7
2,599,480 - Psest_2432 0.75 -0.7
2,599,480 - Psest_2432 0.75 -0.5
2,599,480 - Psest_2432 0.75 -0.5
2,599,480 - Psest_2432 0.75 -0.2
2,599,480 - Psest_2432 0.75 +0.6
2,599,480 - Psest_2432 0.75 +0.1
2,599,620 + Psest_2432 0.87 +0.2
2,599,620 + Psest_2432 0.87 +0.3
2,599,621 - Psest_2432 0.88 -0.4
2,599,727 - -0.7
2,599,727 - -0.3
2,599,779 + -1.1
2,599,789 + -0.1
2,599,789 + +1.1
2,599,789 + -0.8
2,599,790 - -0.5
2,599,790 - +0.3
2,599,790 - +0.0
2,599,790 - +0.2
2,599,790 - +0.3
2,599,804 - -0.4
2,600,144 + Psest_2433 0.12 -0.0
2,600,145 - Psest_2433 0.12 -0.2
2,600,145 - Psest_2433 0.12 +1.5
2,600,145 - Psest_2433 0.12 +0.8
2,600,145 - Psest_2433 0.12 -0.2
2,600,145 - Psest_2433 0.12 +0.5
2,600,145 - Psest_2433 0.12 +0.5
2,600,159 + Psest_2433 0.13 +0.4
2,600,159 + Psest_2433 0.13 +0.0
2,600,159 + Psest_2433 0.13 +0.5
2,600,159 + Psest_2433 0.13 -0.0
2,600,159 + Psest_2433 0.13 +0.2
2,600,159 + Psest_2433 0.13 -0.2
2,600,159 + Psest_2433 0.13 -0.5
2,600,160 - Psest_2433 0.13 +0.6
2,600,160 - Psest_2433 0.13 +1.7
2,600,160 - Psest_2433 0.13 +0.8
2,600,160 - Psest_2433 0.13 -0.6
2,600,160 - Psest_2433 0.13 +1.0
2,600,160 - Psest_2433 0.13 +0.6
2,600,160 - Psest_2433 0.13 +0.5
2,600,160 - Psest_2433 0.13 +0.2
2,600,160 - Psest_2433 0.13 +0.2
2,600,160 - Psest_2433 0.13 +0.4
2,600,160 - Psest_2433 0.13 +0.3
2,600,160 - Psest_2433 0.13 -0.2
2,600,160 - Psest_2433 0.13 +0.8
2,600,160 - Psest_2433 0.13 +0.3
2,600,160 - Psest_2433 0.13 -0.3
2,600,160 - Psest_2433 0.13 +0.9
2,600,186 + Psest_2433 0.14 -0.1
2,600,186 + Psest_2433 0.14 -0.0
2,600,285 + Psest_2433 0.18 -0.7
2,600,285 + Psest_2433 0.18 +0.6
2,600,286 - Psest_2433 0.18 +0.9
2,600,508 + Psest_2433 0.27 -0.8
2,600,687 - Psest_2433 0.34 +0.2
2,600,749 + Psest_2433 0.36 +0.1

Or see this region's nucleotide sequence