Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0916 and Psest_0917 are separated by 448 nucleotides Psest_0917 and Psest_0918 are separated by 356 nucleotides
Psest_0916: Psest_0916 - Phage integrase family., at 995,596 to 996,489
_0916
Psest_0917: Psest_0917 - SEC-C motif., at 996,938 to 998,293
_0917
Psest_0918: Psest_0918 - Predicted permease, DMT superfamily, at 998,650 to 999,558
_0918
Position (kb) 996
997
998
999 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 995.958 kb on - strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.126 kb on + strand, within Psest_0916 at 996.126 kb on + strand, within Psest_0916 at 996.146 kb on + strand, within Psest_0916 at 996.147 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.217 kb on + strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.284 kb on - strand, within Psest_0916 at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.403 kb on - strand at 996.403 kb on - strand at 996.403 kb on - strand at 996.442 kb on - strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.544 kb on + strand at 996.544 kb on + strand at 996.545 kb on - strand at 996.549 kb on - strand at 996.579 kb on + strand at 996.579 kb on + strand at 996.580 kb on - strand at 996.605 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.610 kb on - strand at 996.610 kb on - strand at 996.612 kb on + strand at 996.613 kb on - strand at 996.751 kb on + strand at 996.788 kb on + strand at 996.789 kb on - strand at 996.789 kb on - strand at 996.789 kb on - strand at 996.851 kb on + strand at 996.851 kb on + strand at 996.854 kb on + strand at 996.860 kb on + strand at 996.861 kb on - strand at 996.885 kb on + strand at 996.885 kb on + strand at 996.885 kb on + strand at 996.886 kb on - strand at 996.966 kb on + strand at 996.966 kb on + strand at 996.967 kb on - strand at 996.967 kb on - strand at 997.084 kb on - strand, within Psest_0917 at 997.302 kb on + strand, within Psest_0917 at 997.302 kb on + strand, within Psest_0917 at 997.303 kb on - strand, within Psest_0917 at 997.314 kb on + strand, within Psest_0917 at 997.314 kb on + strand, within Psest_0917 at 997.315 kb on - strand, within Psest_0917 at 997.486 kb on - strand, within Psest_0917 at 997.530 kb on + strand, within Psest_0917 at 997.530 kb on + strand, within Psest_0917 at 997.530 kb on + strand, within Psest_0917 at 997.531 kb on - strand, within Psest_0917 at 997.543 kb on + strand, within Psest_0917 at 997.543 kb on + strand, within Psest_0917 at 997.543 kb on + strand, within Psest_0917 at 997.544 kb on - strand, within Psest_0917 at 997.558 kb on + strand, within Psest_0917 at 997.565 kb on - strand, within Psest_0917 at 997.567 kb on + strand, within Psest_0917 at 997.593 kb on - strand, within Psest_0917 at 997.634 kb on - strand, within Psest_0917 at 997.682 kb on - strand, within Psest_0917 at 997.704 kb on + strand, within Psest_0917 at 997.768 kb on - strand, within Psest_0917 at 997.878 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.885 kb on - strand, within Psest_0917 at 997.888 kb on + strand, within Psest_0917 at 997.952 kb on + strand, within Psest_0917 at 997.990 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.022 kb on + strand, within Psest_0917 at 998.023 kb on - strand, within Psest_0917 at 998.055 kb on + strand, within Psest_0917 at 998.080 kb on + strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.130 kb on - strand, within Psest_0917 at 998.270 kb on + strand at 998.270 kb on + strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.325 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.447 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.487 kb on - strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.673 kb on - strand at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.767 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.867 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 999.047 kb on - strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.157 kb on - strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.161 kb on - strand, within Psest_0918 at 999.196 kb on - strand, within Psest_0918 at 999.237 kb on + strand, within Psest_0918
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 995,958 - Psest_0916 0.40 -0.1 996,021 + Psest_0916 0.48 +1.5 996,021 + Psest_0916 0.48 +1.6 996,021 + Psest_0916 0.48 -0.1 996,021 + Psest_0916 0.48 -0.1 996,022 - Psest_0916 0.48 +1.2 996,022 - Psest_0916 0.48 -0.7 996,022 - Psest_0916 0.48 +0.6 996,022 - Psest_0916 0.48 -1.3 996,022 - Psest_0916 0.48 +0.4 996,022 - Psest_0916 0.48 -2.3 996,022 - Psest_0916 0.48 -4.0 996,023 + Psest_0916 0.48 +1.2 996,023 + Psest_0916 0.48 -0.4 996,023 + Psest_0916 0.48 +0.5 996,024 - Psest_0916 0.48 -2.6 996,024 - Psest_0916 0.48 -2.1 996,024 - Psest_0916 0.48 +2.0 996,126 + Psest_0916 0.59 +0.7 996,126 + Psest_0916 0.59 -1.0 996,146 + Psest_0916 0.62 -1.6 996,147 - Psest_0916 0.62 -4.0 996,214 - Psest_0916 0.69 -1.1 996,214 - Psest_0916 0.69 +1.7 996,214 - Psest_0916 0.69 -1.3 996,214 - Psest_0916 0.69 +1.9 996,217 + Psest_0916 0.69 +2.6 996,218 - Psest_0916 0.70 +0.4 996,218 - Psest_0916 0.70 -2.9 996,218 - Psest_0916 0.70 +1.3 996,283 + Psest_0916 0.77 +1.6 996,283 + Psest_0916 0.77 +1.4 996,283 + Psest_0916 0.77 -0.4 996,283 + Psest_0916 0.77 +1.4 996,283 + Psest_0916 0.77 +0.5 996,283 + Psest_0916 0.77 -2.4 996,284 - Psest_0916 0.77 +2.2 996,402 + -1.1 996,402 + +1.1 996,402 + -0.7 996,402 + -1.5 996,402 + +2.9 996,402 + -3.1 996,402 + +0.1 996,402 + -1.0 996,403 - +2.4 996,403 - -0.5 996,403 - -0.2 996,442 - +0.0 996,465 + -1.2 996,465 + -2.5 996,465 + -2.0 996,465 + +0.9 996,465 + -3.7 996,544 + -1.1 996,544 + +1.2 996,545 - -1.0 996,549 - -0.0 996,579 + -1.0 996,579 + +0.7 996,580 - -4.5 996,605 + -3.7 996,609 + -2.1 996,609 + +0.1 996,609 + +1.4 996,609 + +0.4 996,609 + -2.2 996,610 - -3.3 996,610 - -2.4 996,612 + -0.1 996,613 - +0.5 996,751 + -2.7 996,788 + +0.6 996,789 - -0.4 996,789 - -2.4 996,789 - -0.6 996,851 + +0.8 996,851 + +0.1 996,854 + -3.3 996,860 + -2.0 996,861 - -2.5 996,885 + +1.6 996,885 + +0.3 996,885 + +0.7 996,886 - +0.9 996,966 + -2.3 996,966 + -1.7 996,967 - -2.0 996,967 - -1.2 997,084 - Psest_0917 0.11 -0.7 997,302 + Psest_0917 0.27 -3.0 997,302 + Psest_0917 0.27 +0.9 997,303 - Psest_0917 0.27 +0.5 997,314 + Psest_0917 0.28 +0.4 997,314 + Psest_0917 0.28 +0.1 997,315 - Psest_0917 0.28 -0.4 997,486 - Psest_0917 0.40 +0.1 997,530 + Psest_0917 0.44 -1.4 997,530 + Psest_0917 0.44 -0.3 997,530 + Psest_0917 0.44 +0.5 997,531 - Psest_0917 0.44 -3.0 997,543 + Psest_0917 0.45 +0.3 997,543 + Psest_0917 0.45 -2.7 997,543 + Psest_0917 0.45 +1.3 997,544 - Psest_0917 0.45 +0.9 997,558 + Psest_0917 0.46 -2.4 997,565 - Psest_0917 0.46 -4.3 997,567 + Psest_0917 0.46 -1.7 997,593 - Psest_0917 0.48 -3.5 997,634 - Psest_0917 0.51 -0.2 997,682 - Psest_0917 0.55 -1.3 997,704 + Psest_0917 0.56 +1.0 997,768 - Psest_0917 0.61 -3.1 997,878 + Psest_0917 0.69 -1.7 997,884 + Psest_0917 0.70 -0.7 997,884 + Psest_0917 0.70 -1.5 997,884 + Psest_0917 0.70 +0.6 997,884 + Psest_0917 0.70 -0.6 997,885 - Psest_0917 0.70 -2.6 997,888 + Psest_0917 0.70 -3.5 997,952 + Psest_0917 0.75 +0.6 997,990 + Psest_0917 0.78 +0.1 998,018 + Psest_0917 0.80 -2.0 998,018 + Psest_0917 0.80 +0.7 998,022 + Psest_0917 0.80 -0.1 998,023 - Psest_0917 0.80 -2.1 998,055 + Psest_0917 0.82 -1.3 998,080 + Psest_0917 0.84 -0.9 998,081 - Psest_0917 0.84 -0.9 998,081 - Psest_0917 0.84 -1.5 998,089 - Psest_0917 0.85 -2.2 998,089 - Psest_0917 0.85 +0.6 998,089 - Psest_0917 0.85 -0.8 998,129 + Psest_0917 0.88 -0.9 998,129 + Psest_0917 0.88 -0.9 998,130 - Psest_0917 0.88 +0.5 998,270 + +0.4 998,270 + -1.2 998,271 - +0.1 998,271 - -2.4 998,271 - -0.7 998,325 + +0.8 998,354 + +2.4 998,354 + +1.0 998,354 + -0.8 998,354 + -0.3 998,447 + +1.9 998,486 + -1.5 998,486 + -1.6 998,486 + -2.8 998,486 + -3.3 998,487 - +0.1 998,668 + -0.7 998,668 + -1.1 998,668 + -2.3 998,668 + +0.1 998,668 + +0.7 998,668 + -0.9 998,668 + -1.0 998,668 + +0.1 998,668 + +0.4 998,668 + -0.7 998,669 - -1.5 998,669 - +0.3 998,669 - -2.0 998,669 - +2.4 998,669 - +0.9 998,669 - -2.5 998,669 - +1.3 998,669 - -0.5 998,669 - +3.5 998,669 - +0.0 998,669 - -0.5 998,672 + -0.5 998,672 + -2.0 998,672 + +1.4 998,672 + -2.2 998,672 + -2.3 998,672 + -0.4 998,672 + +2.7 998,672 + -0.4 998,672 + -0.1 998,672 + +1.6 998,672 + +0.2 998,673 - -0.9 998,756 + Psest_0918 0.12 -1.8 998,756 + Psest_0918 0.12 +0.5 998,756 + Psest_0918 0.12 -0.4 998,756 + Psest_0918 0.12 +2.3 998,767 + Psest_0918 0.13 -3.5 998,861 + Psest_0918 0.23 -0.7 998,861 + Psest_0918 0.23 +1.4 998,862 - Psest_0918 0.23 -2.5 998,862 - Psest_0918 0.23 -2.1 998,862 - Psest_0918 0.23 -2.0 998,867 + Psest_0918 0.24 +1.2 998,954 + Psest_0918 0.33 -1.9 998,954 + Psest_0918 0.33 -3.4 998,954 + Psest_0918 0.33 -2.0 998,954 + Psest_0918 0.33 -2.7 998,954 + Psest_0918 0.33 -1.8 998,954 + Psest_0918 0.33 +0.8 998,954 + Psest_0918 0.33 -1.6 998,954 + Psest_0918 0.33 -0.6 998,954 + Psest_0918 0.33 -1.8 998,954 + Psest_0918 0.33 -0.2 998,954 + Psest_0918 0.33 -0.1 998,954 + Psest_0918 0.33 +0.5 998,954 + Psest_0918 0.33 -1.6 998,955 - Psest_0918 0.34 -3.0 998,955 - Psest_0918 0.34 -1.4 998,955 - Psest_0918 0.34 -4.1 998,955 - Psest_0918 0.34 -2.2 998,955 - Psest_0918 0.34 +0.1 998,955 - Psest_0918 0.34 -3.3 998,955 - Psest_0918 0.34 -1.1 998,955 - Psest_0918 0.34 +1.3 998,955 - Psest_0918 0.34 -0.1 998,955 - Psest_0918 0.34 +0.8 998,955 - Psest_0918 0.34 -1.0 998,955 - Psest_0918 0.34 -0.8 998,955 - Psest_0918 0.34 -2.9 999,047 - Psest_0918 0.44 -3.0 999,127 + Psest_0918 0.52 -0.5 999,127 + Psest_0918 0.52 -0.1 999,127 + Psest_0918 0.52 -0.8 999,127 + Psest_0918 0.52 -0.5 999,127 + Psest_0918 0.52 +0.1 999,127 + Psest_0918 0.52 +0.6 999,127 + Psest_0918 0.52 -2.2 999,127 + Psest_0918 0.52 -1.8 999,127 + Psest_0918 0.52 -0.6 999,127 + Psest_0918 0.52 -1.2 999,127 + Psest_0918 0.52 -3.6 999,127 + Psest_0918 0.52 -0.4 999,128 - Psest_0918 0.53 -0.5 999,128 - Psest_0918 0.53 -0.7 999,128 - Psest_0918 0.53 -0.2 999,156 + Psest_0918 0.56 -1.0 999,156 + Psest_0918 0.56 -1.2 999,156 + Psest_0918 0.56 -0.1 999,157 - Psest_0918 0.56 +0.7 999,160 + Psest_0918 0.56 -0.0 999,160 + Psest_0918 0.56 +0.7 999,160 + Psest_0918 0.56 -1.1 999,160 + Psest_0918 0.56 -0.0 999,161 - Psest_0918 0.56 -0.8 999,196 - Psest_0918 0.60 -0.3 999,237 + Psest_0918 0.65 +1.5
Or see this region's nucleotide sequence