Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0077 and Psest_0078 are separated by 30 nucleotides Psest_0078 and Psest_0079 are separated by 94 nucleotides Psest_0079 and Psest_0080 are separated by 143 nucleotides
Psest_0077: Psest_0077 - luciferase family oxidoreductase, group 1, at 78,457 to 79,455
_0077
Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899
_0078
Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419
_0079
Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621
_0080
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 79.460 kb on + strand at 79.733 kb on + strand, within Psest_0078 at 79.734 kb on - strand, within Psest_0078 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.137 kb on - strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.512 kb on + strand at 80.512 kb on + strand at 80.512 kb on + strand at 80.513 kb on - strand at 80.513 kb on - strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.651 kb on - strand at 80.651 kb on - strand at 80.653 kb on + strand at 80.653 kb on + strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.765 kb on + strand, within Psest_0080 at 80.766 kb on - strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.830 kb on + strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.945 kb on - strand, within Psest_0080 at 81.136 kb on + strand, within Psest_0080 at 81.136 kb on + strand, within Psest_0080 at 81.137 kb on - strand, within Psest_0080 at 81.137 kb on - strand, within Psest_0080 at 81.170 kb on - strand, within Psest_0080
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 79,460 + +1.7 79,733 + Psest_0078 0.60 +1.0 79,734 - Psest_0078 0.60 -0.9 80,046 + Psest_0079 0.12 +1.0 80,046 + Psest_0079 0.12 +1.7 80,046 + Psest_0079 0.12 +0.7 80,046 + Psest_0079 0.12 +1.0 80,046 + Psest_0079 0.12 -2.1 80,046 + Psest_0079 0.12 +1.1 80,047 - Psest_0079 0.12 -0.1 80,047 - Psest_0079 0.12 +1.8 80,061 + Psest_0079 0.16 -1.7 80,061 + Psest_0079 0.16 +2.5 80,062 - Psest_0079 0.16 +0.1 80,062 - Psest_0079 0.16 +3.0 80,137 - Psest_0079 0.34 +1.3 80,246 + Psest_0079 0.59 +0.2 80,246 + Psest_0079 0.59 +6.5 80,512 + +0.7 80,512 + +1.7 80,512 + -1.4 80,513 - +0.4 80,513 - +0.0 80,650 + -0.7 80,650 + -0.1 80,650 + -0.2 80,650 + +0.0 80,651 - +0.4 80,651 - +1.1 80,653 + +0.5 80,653 + -0.6 80,654 - -1.9 80,654 - +1.7 80,654 - -0.5 80,765 + Psest_0080 0.19 +2.1 80,766 - Psest_0080 0.19 -2.5 80,768 + Psest_0080 0.19 -2.4 80,768 + Psest_0080 0.19 +1.0 80,768 + Psest_0080 0.19 -1.7 80,768 + Psest_0080 0.19 +0.6 80,768 + Psest_0080 0.19 +0.1 80,768 + Psest_0080 0.19 -2.4 80,768 + Psest_0080 0.19 +0.4 80,769 - Psest_0080 0.19 +1.3 80,769 - Psest_0080 0.19 +1.4 80,769 - Psest_0080 0.19 +2.0 80,769 - Psest_0080 0.19 +0.9 80,830 + Psest_0080 0.25 -1.3 80,831 - Psest_0080 0.25 +2.0 80,831 - Psest_0080 0.25 -1.0 80,852 - Psest_0080 0.27 -0.0 80,852 - Psest_0080 0.27 +0.4 80,852 - Psest_0080 0.27 -1.9 80,852 - Psest_0080 0.27 +1.4 80,945 - Psest_0080 0.36 -1.3 81,136 + Psest_0080 0.54 -1.2 81,136 + Psest_0080 0.54 +2.3 81,137 - Psest_0080 0.54 +0.4 81,137 - Psest_0080 0.54 -2.2 81,170 - Psest_0080 0.57 +0.9
Or see this region's nucleotide sequence