Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0799 and Psest_0800 are separated by 118 nucleotides Psest_0800 and Psest_0801 are separated by 336 nucleotides
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477
_0800
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 874.208 kb on + strand, within Psest_0799 at 874.252 kb on + strand, within Psest_0799 at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.596 kb on + strand at 874.597 kb on - strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.665 kb on - strand at 874.668 kb on + strand at 875.078 kb on + strand, within Psest_0800 at 875.078 kb on + strand, within Psest_0800 at 875.079 kb on - strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.178 kb on - strand, within Psest_0800 at 875.249 kb on + strand, within Psest_0800 at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.598 kb on + strand at 875.599 kb on - strand at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.444 kb on + strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 873,853 + Psest_0799 0.36 -1.5 873,853 + Psest_0799 0.36 +2.1 873,854 - Psest_0799 0.36 -1.1 873,854 - Psest_0799 0.36 -0.0 874,208 + Psest_0799 0.66 +2.2 874,252 + Psest_0799 0.69 +0.9 874,556 + +0.3 874,556 + +0.3 874,556 + +0.2 874,556 + +0.2 874,556 + +0.1 874,556 + -0.2 874,556 + -1.2 874,556 + +0.5 874,556 + +0.1 874,556 + -2.7 874,557 - -0.2 874,557 - -1.0 874,557 - +0.5 874,557 - +0.6 874,557 - +0.7 874,557 - +0.6 874,557 - +0.1 874,557 - +0.7 874,557 - -1.5 874,596 + -0.0 874,597 - -2.5 874,664 + +1.2 874,664 + +2.7 874,664 + +0.7 874,664 + -1.4 874,665 - -1.6 874,668 + -0.2 875,078 + Psest_0800 0.46 +0.6 875,078 + Psest_0800 0.46 +2.1 875,079 - Psest_0800 0.46 -0.5 875,175 + Psest_0800 0.59 -0.1 875,175 + Psest_0800 0.59 +1.5 875,175 + Psest_0800 0.59 -1.1 875,175 + Psest_0800 0.59 +0.2 875,175 + Psest_0800 0.59 -1.7 875,175 + Psest_0800 0.59 +1.6 875,175 + Psest_0800 0.59 +2.5 875,175 + Psest_0800 0.59 -1.8 875,176 - Psest_0800 0.59 +1.4 875,176 - Psest_0800 0.59 -0.4 875,176 - Psest_0800 0.59 -0.6 875,176 - Psest_0800 0.59 +2.3 875,176 - Psest_0800 0.59 -2.0 875,176 - Psest_0800 0.59 +3.0 875,178 - Psest_0800 0.60 +0.6 875,249 + Psest_0800 0.69 -0.2 875,465 + -1.9 875,465 + -2.0 875,465 + +1.1 875,465 + +0.3 875,465 + +1.2 875,465 + +0.9 875,466 - +0.9 875,466 - +0.5 875,466 - -0.3 875,466 - +0.5 875,466 - -0.2 875,466 - -1.6 875,466 - +1.4 875,598 + +0.6 875,599 - +1.5 876,303 + Psest_0801 0.43 +0.5 876,303 + Psest_0801 0.43 +2.2 876,303 + Psest_0801 0.43 +0.0 876,304 - Psest_0801 0.43 +1.7 876,304 - Psest_0801 0.43 +0.9 876,304 - Psest_0801 0.43 +2.4 876,304 - Psest_0801 0.43 +0.2 876,304 - Psest_0801 0.43 +1.2 876,304 - Psest_0801 0.43 -0.0 876,444 + Psest_0801 0.55 -2.0 876,445 - Psest_0801 0.55 -1.2 876,445 - Psest_0801 0.55 -1.8 876,445 - Psest_0801 0.55 +2.1
Or see this region's nucleotide sequence