Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0633 and Psest_0634 overlap by 11 nucleotides Psest_0634 and Psest_0635 are separated by 84 nucleotides
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402
_0634
Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637
_0635
Position (kb) 687
688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 686.180 kb on + strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.181 kb on - strand, within Psest_0633 at 686.198 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.366 kb on + strand, within Psest_0633 at 686.484 kb on + strand, within Psest_0633 at 686.514 kb on + strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.597 kb on + strand, within Psest_0633 at 686.598 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 687.085 kb on - strand at 687.130 kb on + strand at 687.131 kb on - strand at 687.133 kb on - strand at 687.261 kb on + strand at 687.315 kb on + strand at 687.315 kb on + strand at 687.352 kb on + strand, within Psest_0634 at 687.353 kb on - strand, within Psest_0634 at 687.531 kb on + strand, within Psest_0634 at 687.673 kb on + strand, within Psest_0634 at 687.675 kb on + strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.758 kb on + strand, within Psest_0634 at 687.882 kb on + strand, within Psest_0634 at 687.982 kb on - strand, within Psest_0634 at 688.076 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.216 kb on - strand, within Psest_0634 at 688.755 kb on + strand, within Psest_0634 at 688.782 kb on - strand at 688.889 kb on - strand, within Psest_0634 at 688.889 kb on - strand, within Psest_0634 at 688.923 kb on + strand, within Psest_0634 at 688.924 kb on - strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.109 kb on - strand, within Psest_0634 at 689.239 kb on + strand at 689.239 kb on + strand at 689.240 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.366 kb on - strand at 689.439 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.460 kb on + strand at 689.460 kb on + strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.466 kb on + strand at 690.059 kb on + strand, within Psest_0635 at 690.279 kb on + strand, within Psest_0635
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 686,180 + Psest_0633 0.55 -1.4 686,180 + Psest_0633 0.55 -0.8 686,181 - Psest_0633 0.55 -0.6 686,198 + Psest_0633 0.56 +1.4 686,244 + Psest_0633 0.58 -1.4 686,244 + Psest_0633 0.58 -0.4 686,245 - Psest_0633 0.58 +1.4 686,245 - Psest_0633 0.58 -1.2 686,366 + Psest_0633 0.64 -1.3 686,484 + Psest_0633 0.69 +1.5 686,514 + Psest_0633 0.71 -0.5 686,556 - Psest_0633 0.73 -2.4 686,556 - Psest_0633 0.73 +0.1 686,597 + Psest_0633 0.75 +1.0 686,598 - Psest_0633 0.75 -1.2 686,856 - Psest_0633 0.87 -0.0 686,856 - Psest_0633 0.87 -0.8 687,085 - -0.6 687,130 + -0.1 687,131 - +1.5 687,133 - -3.4 687,261 + -0.7 687,315 + +0.2 687,315 + -0.2 687,352 + Psest_0634 0.10 +2.0 687,353 - Psest_0634 0.10 -0.4 687,531 + Psest_0634 0.18 -1.2 687,673 + Psest_0634 0.24 +0.6 687,675 + Psest_0634 0.24 +0.1 687,676 - Psest_0634 0.24 -1.4 687,676 - Psest_0634 0.24 -2.7 687,676 - Psest_0634 0.24 -0.9 687,758 + Psest_0634 0.28 -1.9 687,882 + Psest_0634 0.33 -1.0 687,982 - Psest_0634 0.38 +2.7 688,076 + Psest_0634 0.42 +2.6 688,212 + Psest_0634 0.48 +1.4 688,212 + Psest_0634 0.48 -0.8 688,216 - Psest_0634 0.48 -0.2 688,755 + Psest_0634 0.72 +2.5 688,782 - -0.0 688,889 - Psest_0634 0.77 +1.6 688,889 - Psest_0634 0.77 -2.2 688,923 + Psest_0634 0.79 +3.0 688,924 - Psest_0634 0.79 -0.5 689,065 + Psest_0634 0.85 +1.2 689,065 + Psest_0634 0.85 -2.4 689,108 + Psest_0634 0.87 +1.4 689,108 + Psest_0634 0.87 -0.4 689,108 + Psest_0634 0.87 +2.8 689,108 + Psest_0634 0.87 +0.4 689,109 - Psest_0634 0.87 -2.1 689,239 + -1.3 689,239 + +0.5 689,240 - +1.0 689,270 - +3.4 689,270 - -0.9 689,270 - -1.2 689,270 - -1.7 689,366 - +0.0 689,439 + +0.8 689,452 + -1.5 689,452 + -2.3 689,452 + +0.6 689,460 + +1.0 689,460 + +0.4 689,461 - +0.2 689,461 - -0.5 689,461 - -0.7 689,461 - +0.6 689,466 + -0.2 690,059 + Psest_0635 0.27 +0.6 690,279 + Psest_0635 0.37 +1.2
Or see this region's nucleotide sequence