Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4129

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4127 and Psest_4128 are separated by 41 nucleotidesPsest_4128 and Psest_4129 are separated by 14 nucleotidesPsest_4129 and Psest_4130 are separated by 292 nucleotides Psest_4127: Psest_4127 - Cyclopropane fatty acid synthase and related methyltransferases, at 4,305,368 to 4,306,549 _4127 Psest_4128: Psest_4128 - Universal stress protein UspA and related nucleotide-binding proteins, at 4,306,591 to 4,307,442 _4128 Psest_4129: Psest_4129 - Sulfate permease and related transporters (MFS superfamily), at 4,307,457 to 4,308,944 _4129 Psest_4130: Psest_4130 - uncharacterized domain HDIG, at 4,309,237 to 4,310,451 _4130 Position (kb) 4307 4308 4309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4306.542 kb on - strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.543 kb on + strandat 4306.544 kb on - strandat 4306.544 kb on - strandat 4306.544 kb on - strandat 4306.544 kb on - strandat 4306.544 kb on - strandat 4306.544 kb on - strandat 4306.682 kb on + strand, within Psest_4128at 4306.683 kb on - strand, within Psest_4128at 4306.725 kb on - strand, within Psest_4128at 4307.316 kb on - strand, within Psest_4128at 4307.432 kb on - strandat 4307.432 kb on - strandat 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.712 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.731 kb on + strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.732 kb on - strand, within Psest_4129at 4307.758 kb on - strand, within Psest_4129at 4307.758 kb on - strand, within Psest_4129at 4307.779 kb on + strand, within Psest_4129at 4307.840 kb on - strand, within Psest_4129at 4307.840 kb on - strand, within Psest_4129at 4308.027 kb on + strand, within Psest_4129at 4308.028 kb on - strand, within Psest_4129at 4308.028 kb on - strand, within Psest_4129at 4308.388 kb on + strand, within Psest_4129at 4308.389 kb on - strand, within Psest_4129at 4308.460 kb on + strand, within Psest_4129at 4308.460 kb on + strand, within Psest_4129at 4308.460 kb on + strand, within Psest_4129at 4308.461 kb on - strand, within Psest_4129at 4308.472 kb on + strand, within Psest_4129at 4308.472 kb on + strand, within Psest_4129at 4308.472 kb on + strand, within Psest_4129at 4308.472 kb on + strand, within Psest_4129at 4308.473 kb on - strand, within Psest_4129at 4308.473 kb on - strand, within Psest_4129at 4308.473 kb on - strand, within Psest_4129at 4308.473 kb on - strand, within Psest_4129at 4308.473 kb on - strand, within Psest_4129at 4308.631 kb on + strand, within Psest_4129at 4308.683 kb on - strand, within Psest_4129at 4308.806 kb on - strandat 4308.806 kb on - strandat 4308.806 kb on - strandat 4308.950 kb on + strandat 4308.999 kb on + strandat 4309.000 kb on - strandat 4309.000 kb on - strandat 4309.000 kb on - strandat 4309.126 kb on + strandat 4309.126 kb on + strandat 4309.127 kb on - strandat 4309.204 kb on + strandat 4309.238 kb on + strandat 4309.239 kb on - strandat 4309.370 kb on + strand, within Psest_4130at 4309.370 kb on + strand, within Psest_4130at 4309.370 kb on + strand, within Psest_4130at 4309.370 kb on + strand, within Psest_4130at 4309.371 kb on - strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.469 kb on + strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.470 kb on - strand, within Psest_4130at 4309.482 kb on + strand, within Psest_4130at 4309.483 kb on - strand, within Psest_4130at 4309.574 kb on + strand, within Psest_4130at 4309.574 kb on + strand, within Psest_4130at 4309.574 kb on + strand, within Psest_4130at 4309.575 kb on - strand, within Psest_4130at 4309.575 kb on - strand, within Psest_4130at 4309.601 kb on + strand, within Psest_4130at 4309.601 kb on + strand, within Psest_4130at 4309.601 kb on + strand, within Psest_4130at 4309.601 kb on + strand, within Psest_4130at 4309.601 kb on + strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.602 kb on - strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.790 kb on + strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130at 4309.791 kb on - strand, within Psest_4130

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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4,306,542 - -1.1
4,306,543 + +1.0
4,306,543 + +0.8
4,306,543 + +0.0
4,306,543 + +2.2
4,306,543 + -1.7
4,306,543 + -0.5
4,306,543 + +3.1
4,306,543 + +0.3
4,306,543 + +0.0
4,306,543 + -1.2
4,306,543 + -0.1
4,306,543 + +1.5
4,306,543 + +1.5
4,306,543 + -0.7
4,306,544 - -0.6
4,306,544 - -2.0
4,306,544 - +0.1
4,306,544 - -1.4
4,306,544 - +0.6
4,306,544 - -1.0
4,306,682 + Psest_4128 0.11 -1.2
4,306,683 - Psest_4128 0.11 -0.6
4,306,725 - Psest_4128 0.16 -0.5
4,307,316 - Psest_4128 0.85 -2.3
4,307,432 - -2.3
4,307,432 - +1.0
4,307,712 + Psest_4129 0.17 -1.9
4,307,712 + Psest_4129 0.17 +1.1
4,307,712 + Psest_4129 0.17 +0.8
4,307,712 + Psest_4129 0.17 -2.7
4,307,712 + Psest_4129 0.17 +2.6
4,307,712 + Psest_4129 0.17 -1.1
4,307,712 + Psest_4129 0.17 +1.0
4,307,731 + Psest_4129 0.18 +1.6
4,307,731 + Psest_4129 0.18 -0.1
4,307,731 + Psest_4129 0.18 +2.7
4,307,731 + Psest_4129 0.18 -2.1
4,307,731 + Psest_4129 0.18 +0.8
4,307,731 + Psest_4129 0.18 +1.9
4,307,731 + Psest_4129 0.18 +1.4
4,307,731 + Psest_4129 0.18 +1.8
4,307,731 + Psest_4129 0.18 +1.0
4,307,731 + Psest_4129 0.18 +0.2
4,307,731 + Psest_4129 0.18 +0.3
4,307,732 - Psest_4129 0.18 -1.0
4,307,732 - Psest_4129 0.18 +0.3
4,307,732 - Psest_4129 0.18 -2.2
4,307,732 - Psest_4129 0.18 +0.9
4,307,732 - Psest_4129 0.18 +0.8
4,307,732 - Psest_4129 0.18 -0.7
4,307,732 - Psest_4129 0.18 -1.4
4,307,732 - Psest_4129 0.18 -0.2
4,307,758 - Psest_4129 0.20 -0.3
4,307,758 - Psest_4129 0.20 -0.4
4,307,779 + Psest_4129 0.22 +2.3
4,307,840 - Psest_4129 0.26 +0.5
4,307,840 - Psest_4129 0.26 +1.4
4,308,027 + Psest_4129 0.38 +0.3
4,308,028 - Psest_4129 0.38 +0.6
4,308,028 - Psest_4129 0.38 +0.9
4,308,388 + Psest_4129 0.63 +1.0
4,308,389 - Psest_4129 0.63 -0.9
4,308,460 + Psest_4129 0.67 -1.7
4,308,460 + Psest_4129 0.67 +2.0
4,308,460 + Psest_4129 0.67 -1.7
4,308,461 - Psest_4129 0.67 -0.8
4,308,472 + Psest_4129 0.68 -1.5
4,308,472 + Psest_4129 0.68 -0.7
4,308,472 + Psest_4129 0.68 +0.4
4,308,472 + Psest_4129 0.68 -2.3
4,308,473 - Psest_4129 0.68 -2.5
4,308,473 - Psest_4129 0.68 -2.7
4,308,473 - Psest_4129 0.68 +2.1
4,308,473 - Psest_4129 0.68 -0.1
4,308,473 - Psest_4129 0.68 -2.6
4,308,631 + Psest_4129 0.79 +0.7
4,308,683 - Psest_4129 0.82 -1.4
4,308,806 - +2.3
4,308,806 - -0.2
4,308,806 - +0.4
4,308,950 + +0.3
4,308,999 + -2.7
4,309,000 - -1.0
4,309,000 - -1.5
4,309,000 - -1.4
4,309,126 + -0.6
4,309,126 + +0.2
4,309,127 - -0.6
4,309,204 + +0.9
4,309,238 + -2.5
4,309,239 - -0.8
4,309,370 + Psest_4130 0.11 +1.5
4,309,370 + Psest_4130 0.11 -0.7
4,309,370 + Psest_4130 0.11 +0.7
4,309,370 + Psest_4130 0.11 -0.8
4,309,371 - Psest_4130 0.11 +1.7
4,309,469 + Psest_4130 0.19 -0.3
4,309,469 + Psest_4130 0.19 +1.3
4,309,469 + Psest_4130 0.19 +2.6
4,309,469 + Psest_4130 0.19 +0.9
4,309,469 + Psest_4130 0.19 -0.0
4,309,469 + Psest_4130 0.19 -1.6
4,309,469 + Psest_4130 0.19 -1.7
4,309,470 - Psest_4130 0.19 +0.5
4,309,470 - Psest_4130 0.19 +0.4
4,309,470 - Psest_4130 0.19 -0.1
4,309,470 - Psest_4130 0.19 -2.5
4,309,470 - Psest_4130 0.19 +1.7
4,309,470 - Psest_4130 0.19 -0.1
4,309,470 - Psest_4130 0.19 +0.9
4,309,470 - Psest_4130 0.19 +0.9
4,309,470 - Psest_4130 0.19 -1.1
4,309,482 + Psest_4130 0.20 +2.0
4,309,483 - Psest_4130 0.20 +1.5
4,309,574 + Psest_4130 0.28 +0.2
4,309,574 + Psest_4130 0.28 +1.4
4,309,574 + Psest_4130 0.28 +1.6
4,309,575 - Psest_4130 0.28 -0.0
4,309,575 - Psest_4130 0.28 +1.0
4,309,601 + Psest_4130 0.30 +0.1
4,309,601 + Psest_4130 0.30 -0.4
4,309,601 + Psest_4130 0.30 +1.1
4,309,601 + Psest_4130 0.30 -2.1
4,309,601 + Psest_4130 0.30 +0.8
4,309,602 - Psest_4130 0.30 +1.7
4,309,602 - Psest_4130 0.30 -0.4
4,309,602 - Psest_4130 0.30 -0.6
4,309,602 - Psest_4130 0.30 +1.3
4,309,602 - Psest_4130 0.30 +1.5
4,309,602 - Psest_4130 0.30 -2.5
4,309,790 + Psest_4130 0.46 -1.6
4,309,790 + Psest_4130 0.46 +0.9
4,309,790 + Psest_4130 0.46 +1.2
4,309,790 + Psest_4130 0.46 +0.8
4,309,790 + Psest_4130 0.46 +0.1
4,309,790 + Psest_4130 0.46 +1.9
4,309,790 + Psest_4130 0.46 +0.1
4,309,790 + Psest_4130 0.46 -0.1
4,309,790 + Psest_4130 0.46 -1.4
4,309,790 + Psest_4130 0.46 +0.7
4,309,790 + Psest_4130 0.46 +1.5
4,309,790 + Psest_4130 0.46 -1.5
4,309,790 + Psest_4130 0.46 -1.6
4,309,790 + Psest_4130 0.46 +1.1
4,309,790 + Psest_4130 0.46 +0.1
4,309,790 + Psest_4130 0.46 +1.0
4,309,790 + Psest_4130 0.46 -2.2
4,309,790 + Psest_4130 0.46 -1.3
4,309,790 + Psest_4130 0.46 +0.2
4,309,790 + Psest_4130 0.46 +0.0
4,309,790 + Psest_4130 0.46 +0.3
4,309,790 + Psest_4130 0.46 -0.2
4,309,790 + Psest_4130 0.46 -1.8
4,309,790 + Psest_4130 0.46 +0.5
4,309,790 + Psest_4130 0.46 -2.5
4,309,790 + Psest_4130 0.46 -2.9
4,309,790 + Psest_4130 0.46 -0.3
4,309,790 + Psest_4130 0.46 -1.7
4,309,790 + Psest_4130 0.46 +1.5
4,309,790 + Psest_4130 0.46 -1.7
4,309,790 + Psest_4130 0.46 +0.1
4,309,790 + Psest_4130 0.46 -0.8
4,309,790 + Psest_4130 0.46 +0.2
4,309,790 + Psest_4130 0.46 +0.4
4,309,791 - Psest_4130 0.46 -0.1
4,309,791 - Psest_4130 0.46 +0.6
4,309,791 - Psest_4130 0.46 -1.3
4,309,791 - Psest_4130 0.46 -0.0
4,309,791 - Psest_4130 0.46 +1.0
4,309,791 - Psest_4130 0.46 -2.0
4,309,791 - Psest_4130 0.46 -1.8
4,309,791 - Psest_4130 0.46 -1.0
4,309,791 - Psest_4130 0.46 -3.2
4,309,791 - Psest_4130 0.46 +0.4
4,309,791 - Psest_4130 0.46 -2.1
4,309,791 - Psest_4130 0.46 +0.7
4,309,791 - Psest_4130 0.46 -1.4
4,309,791 - Psest_4130 0.46 +0.9
4,309,791 - Psest_4130 0.46 +1.7
4,309,791 - Psest_4130 0.46 -0.7
4,309,791 - Psest_4130 0.46 +0.9
4,309,791 - Psest_4130 0.46 +0.3
4,309,791 - Psest_4130 0.46 -2.1
4,309,791 - Psest_4130 0.46 -1.4
4,309,791 - Psest_4130 0.46 +0.4
4,309,791 - Psest_4130 0.46 -0.0
4,309,791 - Psest_4130 0.46 -0.2

Or see this region's nucleotide sequence