Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0378 and Psest_0379 are separated by 126 nucleotides Psest_0379 and Psest_0380 are separated by 159 nucleotides
Psest_0378: Psest_0378 - Lactate dehydrogenase and related dehydrogenases, at 406,715 to 407,644
_0378
Psest_0379: Psest_0379 - Galactose mutarotase and related enzymes, at 407,771 to 408,661
_0379
Psest_0380: Psest_0380 - TonB-dependent siderophore receptor, at 408,821 to 410,944
_0380
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 407.154 kb on + strand, within Psest_0378 at 407.154 kb on + strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.219 kb on + strand, within Psest_0378 at 407.220 kb on - strand, within Psest_0378 at 407.522 kb on - strand, within Psest_0378 at 407.677 kb on + strand at 407.908 kb on - strand, within Psest_0379 at 408.199 kb on - strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.376 kb on - strand, within Psest_0379 at 408.506 kb on + strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379 at 408.800 kb on + strand at 408.801 kb on - strand at 408.970 kb on + strand at 408.989 kb on + strand at 408.990 kb on - strand at 409.148 kb on + strand, within Psest_0380 at 409.149 kb on - strand, within Psest_0380 at 409.238 kb on + strand, within Psest_0380 at 409.238 kb on + strand, within Psest_0380 at 409.238 kb on + strand, within Psest_0380 at 409.239 kb on - strand, within Psest_0380 at 409.239 kb on - strand, within Psest_0380 at 409.239 kb on - strand, within Psest_0380 at 409.311 kb on - strand, within Psest_0380
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 407,154 + Psest_0378 0.47 +0.2 407,154 + Psest_0378 0.47 +2.5 407,155 - Psest_0378 0.47 +0.6 407,155 - Psest_0378 0.47 +0.2 407,219 + Psest_0378 0.54 +3.8 407,220 - Psest_0378 0.54 +1.1 407,522 - Psest_0378 0.87 +0.7 407,677 + +2.1 407,908 - Psest_0379 0.15 +1.5 408,199 - Psest_0379 0.48 -0.4 408,254 + Psest_0379 0.54 -0.7 408,254 + Psest_0379 0.54 +0.2 408,254 + Psest_0379 0.54 -1.2 408,254 + Psest_0379 0.54 -1.0 408,254 + Psest_0379 0.54 +0.2 408,255 - Psest_0379 0.54 +0.0 408,255 - Psest_0379 0.54 -0.1 408,376 - Psest_0379 0.68 -1.9 408,506 + Psest_0379 0.82 +0.7 408,507 - Psest_0379 0.83 -0.3 408,507 - Psest_0379 0.83 -0.2 408,800 + -0.8 408,801 - +1.4 408,970 + -2.8 408,989 + -0.5 408,990 - +4.7 409,148 + Psest_0380 0.15 -3.1 409,149 - Psest_0380 0.15 -1.7 409,238 + Psest_0380 0.20 +0.9 409,238 + Psest_0380 0.20 +0.5 409,238 + Psest_0380 0.20 +0.5 409,239 - Psest_0380 0.20 +1.0 409,239 - Psest_0380 0.20 -0.3 409,239 - Psest_0380 0.20 +0.0 409,311 - Psest_0380 0.23 -0.9
Or see this region's nucleotide sequence