Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0365

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0364 and Psest_0365 are separated by 41 nucleotidesPsest_0365 and Psest_0366 are separated by 377 nucleotidesPsest_0366 and Psest_0367 overlap by 11 nucleotides Psest_0364: Psest_0364 - Gluconolactonase, at 390,412 to 391,302 _0364 Psest_0365: Psest_0365 - NAD dependent epimerase/dehydratase family., at 391,344 to 392,159 _0365 Psest_0366: Psest_0366 - Predicted membrane protein, at 392,537 to 392,845 _0366 Psest_0367: Psest_0367 - Predicted branched-chain amino acid permease (azaleucine resistance), at 392,835 to 393,551 _0367 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 390.755 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 391.217 kb on + strandat 391.323 kb on + strandat 391.324 kb on - strandat 391.324 kb on - strandat 391.384 kb on + strandat 391.384 kb on + strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.411 kb on + strandat 391.412 kb on - strandat 391.528 kb on + strand, within Psest_0365at 391.687 kb on + strand, within Psest_0365at 391.687 kb on + strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.690 kb on + strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.732 kb on + strand, within Psest_0365at 391.735 kb on + strand, within Psest_0365at 391.736 kb on - strand, within Psest_0365at 391.736 kb on - strand, within Psest_0365at 391.855 kb on + strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.859 kb on + strand, within Psest_0365at 391.859 kb on + strand, within Psest_0365at 391.860 kb on - strand, within Psest_0365at 392.065 kb on + strand, within Psest_0365at 392.154 kb on - strandat 392.215 kb on - strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.274 kb on + strandat 392.274 kb on + strandat 392.275 kb on - strandat 392.275 kb on - strandat 392.275 kb on - strandat 392.313 kb on + strandat 392.313 kb on + strandat 392.313 kb on + strandat 392.314 kb on - strandat 392.314 kb on - strandat 392.314 kb on - strandat 392.482 kb on - strandat 392.923 kb on + strand, within Psest_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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390,755 + Psest_0364 0.38 -0.9
390,803 + Psest_0364 0.44 -1.3
390,803 + Psest_0364 0.44 +2.7
390,803 + Psest_0364 0.44 +1.6
390,803 + Psest_0364 0.44 -1.3
390,803 + Psest_0364 0.44 -2.4
390,803 + Psest_0364 0.44 -3.0
390,804 - Psest_0364 0.44 +0.5
390,804 - Psest_0364 0.44 +2.7
390,804 - Psest_0364 0.44 -0.3
390,804 - Psest_0364 0.44 +0.8
390,804 - Psest_0364 0.44 -0.8
390,804 - Psest_0364 0.44 -1.3
390,804 - Psest_0364 0.44 +2.4
390,804 - Psest_0364 0.44 -1.7
390,804 - Psest_0364 0.44 +0.2
390,804 - Psest_0364 0.44 +0.1
391,217 + -1.5
391,323 + +1.1
391,324 - +1.0
391,324 - +2.9
391,384 + -0.6
391,384 + +1.4
391,385 - -2.5
391,385 - -0.5
391,385 - +1.9
391,385 - -1.0
391,385 - -1.5
391,385 - +0.1
391,411 + -0.1
391,412 - +0.8
391,528 + Psest_0365 0.23 +0.3
391,687 + Psest_0365 0.42 +0.6
391,687 + Psest_0365 0.42 +1.4
391,688 - Psest_0365 0.42 +0.0
391,688 - Psest_0365 0.42 -1.2
391,688 - Psest_0365 0.42 -3.1
391,690 + Psest_0365 0.42 +1.1
391,691 - Psest_0365 0.43 +0.5
391,691 - Psest_0365 0.43 +2.3
391,691 - Psest_0365 0.43 +1.0
391,691 - Psest_0365 0.43 +1.8
391,691 - Psest_0365 0.43 -0.7
391,691 - Psest_0365 0.43 +0.4
391,691 - Psest_0365 0.43 -2.0
391,732 + Psest_0365 0.48 -0.3
391,735 + Psest_0365 0.48 +0.6
391,736 - Psest_0365 0.48 +1.3
391,736 - Psest_0365 0.48 -0.9
391,855 + Psest_0365 0.63 -1.5
391,856 - Psest_0365 0.63 +0.1
391,856 - Psest_0365 0.63 +0.5
391,856 - Psest_0365 0.63 +0.5
391,859 + Psest_0365 0.63 -0.4
391,859 + Psest_0365 0.63 -0.4
391,860 - Psest_0365 0.63 +2.1
392,065 + Psest_0365 0.88 +1.3
392,154 - -0.1
392,215 - +0.9
392,272 + -0.1
392,272 + -0.4
392,272 + +0.6
392,272 + -1.4
392,273 - -1.0
392,273 - -0.9
392,273 - -0.6
392,273 - -0.6
392,273 - +1.1
392,273 - -0.1
392,273 - +1.1
392,273 - +2.2
392,273 - +4.2
392,273 - +1.2
392,273 - +1.7
392,273 - -0.7
392,273 - +1.1
392,273 - +0.5
392,273 - -0.4
392,273 - -2.7
392,273 - +1.3
392,273 - +1.2
392,273 - +2.2
392,273 - +1.8
392,274 + +0.5
392,274 + -0.1
392,275 - -1.0
392,275 - +1.2
392,275 - +4.6
392,313 + -0.7
392,313 + -0.9
392,313 + +0.6
392,314 - +1.0
392,314 - +1.9
392,314 - -0.1
392,482 - -2.1
392,923 + Psest_0367 0.12 +0.9

Or see this region's nucleotide sequence