Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0358 and Psest_0359 are separated by 116 nucleotides Psest_0359 and Psest_0360 are separated by 57 nucleotides Psest_0360 and Psest_0361 are separated by 223 nucleotides
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 385.442 kb on - strand at 385.470 kb on + strand at 385.470 kb on + strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.497 kb on + strand at 385.506 kb on + strand at 385.520 kb on + strand at 385.521 kb on - strand at 386.190 kb on + strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.566 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.284 kb on - strand at 387.333 kb on - strand at 387.383 kb on + strand at 387.383 kb on + strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.424 kb on - strand at 387.432 kb on - strand at 387.432 kb on - strand at 387.505 kb on + strand at 387.505 kb on + strand at 387.538 kb on - strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.575 kb on + strand at 387.575 kb on + strand at 387.596 kb on - strand at 387.596 kb on - strand at 387.664 kb on - strand, within Psest_0361 at 387.836 kb on + strand, within Psest_0361 at 387.905 kb on + strand, within Psest_0361 at 387.906 kb on - strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.181 kb on + strand, within Psest_0361 at 388.182 kb on - strand, within Psest_0361
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 385,442 - -0.1 385,470 + -1.0 385,470 + +2.0 385,471 - +0.3 385,471 - -0.4 385,471 - -1.0 385,471 - +0.1 385,497 + +0.6 385,506 + +0.1 385,520 + +0.5 385,521 - -2.2 386,190 + Psest_0359 0.84 -0.3 386,191 - Psest_0359 0.84 -0.0 386,191 - Psest_0359 0.84 -2.6 386,191 - Psest_0359 0.84 -1.8 386,191 - Psest_0359 0.84 +0.5 386,566 + Psest_0360 0.22 +1.3 386,676 + Psest_0360 0.34 +0.4 386,676 + Psest_0360 0.34 -0.5 386,676 + Psest_0360 0.34 -2.3 386,676 + Psest_0360 0.34 +0.5 386,677 - Psest_0360 0.34 +2.5 386,677 - Psest_0360 0.34 +0.2 386,677 - Psest_0360 0.34 -0.9 386,677 - Psest_0360 0.34 -1.1 386,677 - Psest_0360 0.34 -0.1 386,677 - Psest_0360 0.34 +0.2 387,005 - Psest_0360 0.70 -1.2 387,005 - Psest_0360 0.70 +0.2 387,005 - Psest_0360 0.70 -1.1 387,005 - Psest_0360 0.70 -0.2 387,005 - Psest_0360 0.70 -0.1 387,005 - Psest_0360 0.70 -0.9 387,005 - Psest_0360 0.70 +0.2 387,154 - Psest_0360 0.87 +0.2 387,154 - Psest_0360 0.87 +0.1 387,154 - Psest_0360 0.87 +0.7 387,284 - -0.6 387,333 - -1.8 387,383 + +3.9 387,383 + +0.1 387,392 - +1.6 387,392 - -1.6 387,392 - -0.6 387,424 - -0.2 387,432 - +0.1 387,432 - -1.2 387,505 + -1.5 387,505 + +1.7 387,538 - -0.4 387,539 + -1.1 387,539 + -0.8 387,539 + -1.1 387,539 + -1.0 387,539 + +1.3 387,539 + -1.9 387,539 + +1.4 387,539 + +1.6 387,539 + -0.9 387,539 + -2.6 387,539 + -0.8 387,539 + +1.4 387,539 + -1.2 387,539 + +1.7 387,539 + +1.5 387,539 + +2.9 387,540 - -2.1 387,540 - -2.1 387,540 - +1.1 387,540 - -0.3 387,540 - +1.1 387,540 - -2.0 387,540 - +0.5 387,540 - +1.6 387,540 - -0.1 387,540 - -1.0 387,540 - +0.2 387,540 - -1.9 387,540 - -3.0 387,540 - +0.5 387,540 - -1.2 387,575 + -0.8 387,575 + +0.5 387,596 - +1.5 387,596 - -1.8 387,664 - Psest_0361 0.13 -0.6 387,836 + Psest_0361 0.27 -1.9 387,905 + Psest_0361 0.32 -1.1 387,906 - Psest_0361 0.32 +0.4 387,998 + Psest_0361 0.39 -1.8 387,998 + Psest_0361 0.39 +0.3 387,999 - Psest_0361 0.39 -0.9 387,999 - Psest_0361 0.39 +1.1 387,999 - Psest_0361 0.39 -0.5 387,999 - Psest_0361 0.39 +0.0 388,007 + Psest_0361 0.40 -0.5 388,007 + Psest_0361 0.40 +2.1 388,165 + Psest_0361 0.52 +1.4 388,165 + Psest_0361 0.52 -0.3 388,165 + Psest_0361 0.52 -1.3 388,165 + Psest_0361 0.52 +0.4 388,165 + Psest_0361 0.52 -2.4 388,165 + Psest_0361 0.52 -1.6 388,166 - Psest_0361 0.52 -1.1 388,166 - Psest_0361 0.52 +0.5 388,166 - Psest_0361 0.52 -0.9 388,166 - Psest_0361 0.52 +1.1 388,166 - Psest_0361 0.52 -2.3 388,166 - Psest_0361 0.52 +1.6 388,166 - Psest_0361 0.52 +1.5 388,181 + Psest_0361 0.53 +1.4 388,182 - Psest_0361 0.54 -1.1
Or see this region's nucleotide sequence