Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3165

Experiment: Def Carbenicillin 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3164 and Psest_3165 are separated by 231 nucleotidesPsest_3165 and Psest_3166 are separated by 93 nucleotides Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668 _3164 Psest_3165: Psest_3165 - diguanylate cyclase (GGDEF) domain, at 3,337,900 to 3,338,760 _3165 Psest_3166: Psest_3166 - Superfamily II DNA and RNA helicases, at 3,338,854 to 3,340,287 _3166 Position (kb) 3337 3338 3339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3336.913 kb on + strandat 3337.214 kb on - strand, within Psest_3164at 3337.214 kb on - strand, within Psest_3164at 3337.432 kb on + strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.523 kb on + strand, within Psest_3164at 3337.524 kb on - strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.560 kb on - strand, within Psest_3164at 3337.695 kb on + strandat 3337.696 kb on - strandat 3337.696 kb on - strandat 3337.696 kb on - strandat 3337.702 kb on + strandat 3337.719 kb on + strandat 3337.720 kb on - strandat 3337.720 kb on - strandat 3337.971 kb on + strandat 3337.971 kb on + strandat 3337.971 kb on + strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3338.013 kb on - strand, within Psest_3165at 3338.037 kb on + strand, within Psest_3165at 3338.053 kb on + strand, within Psest_3165at 3338.116 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.566 kb on - strand, within Psest_3165at 3338.651 kb on + strand, within Psest_3165at 3338.696 kb on + strandat 3338.696 kb on + strandat 3338.697 kb on - strandat 3338.697 kb on - strandat 3338.720 kb on - strandat 3338.720 kb on - strandat 3338.810 kb on + strandat 3338.810 kb on + strandat 3338.810 kb on + strandat 3338.811 kb on - strandat 3338.834 kb on - strandat 3338.834 kb on - strandat 3338.834 kb on - strandat 3338.877 kb on - strandat 3339.018 kb on + strand, within Psest_3166at 3339.019 kb on - strand, within Psest_3166at 3339.099 kb on - strand, within Psest_3166at 3339.184 kb on + strand, within Psest_3166at 3339.185 kb on - strand, within Psest_3166at 3339.218 kb on - strand, within Psest_3166at 3339.285 kb on + strand, within Psest_3166at 3339.285 kb on + strand, within Psest_3166at 3339.335 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166at 3339.422 kb on - strand, within Psest_3166

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
remove
3,336,913 + -0.1
3,337,214 - Psest_3164 0.31 -0.2
3,337,214 - Psest_3164 0.31 +0.3
3,337,432 + Psest_3164 0.64 +2.7
3,337,433 - Psest_3164 0.64 -0.5
3,337,433 - Psest_3164 0.64 -0.5
3,337,433 - Psest_3164 0.64 +1.7
3,337,433 - Psest_3164 0.64 -1.3
3,337,523 + Psest_3164 0.78 +0.1
3,337,524 - Psest_3164 0.78 -0.3
3,337,559 + Psest_3164 0.83 +0.8
3,337,559 + Psest_3164 0.83 -0.8
3,337,559 + Psest_3164 0.83 -1.4
3,337,559 + Psest_3164 0.83 +0.0
3,337,560 - Psest_3164 0.83 +0.5
3,337,695 + +1.1
3,337,696 - +0.5
3,337,696 - +0.5
3,337,696 - -2.5
3,337,702 + +0.3
3,337,719 + -2.8
3,337,720 - -0.4
3,337,720 - +0.1
3,337,971 + -1.5
3,337,971 + +0.9
3,337,971 + -0.3
3,337,972 - +0.4
3,337,972 - +0.2
3,337,972 - +1.2
3,337,972 - -0.2
3,337,988 + Psest_3165 0.10 -1.0
3,337,988 + Psest_3165 0.10 -0.1
3,337,988 + Psest_3165 0.10 +0.4
3,337,988 + Psest_3165 0.10 -1.4
3,337,988 + Psest_3165 0.10 -1.9
3,337,988 + Psest_3165 0.10 -3.8
3,337,988 + Psest_3165 0.10 -0.8
3,337,988 + Psest_3165 0.10 +0.1
3,337,988 + Psest_3165 0.10 -0.2
3,337,988 + Psest_3165 0.10 -0.0
3,337,988 + Psest_3165 0.10 -0.6
3,337,988 + Psest_3165 0.10 +0.8
3,337,988 + Psest_3165 0.10 -1.2
3,337,988 + Psest_3165 0.10 -1.7
3,337,988 + Psest_3165 0.10 -2.4
3,337,988 + Psest_3165 0.10 -0.0
3,337,988 + Psest_3165 0.10 +0.0
3,337,988 + Psest_3165 0.10 -0.8
3,337,988 + Psest_3165 0.10 +0.2
3,337,988 + Psest_3165 0.10 -1.9
3,337,988 + Psest_3165 0.10 +1.2
3,337,988 + Psest_3165 0.10 +0.5
3,337,988 + Psest_3165 0.10 +1.2
3,337,988 + Psest_3165 0.10 -1.0
3,337,989 - Psest_3165 0.10 -2.5
3,337,989 - Psest_3165 0.10 +0.2
3,337,989 - Psest_3165 0.10 -2.5
3,337,989 - Psest_3165 0.10 +2.3
3,337,989 - Psest_3165 0.10 +1.0
3,337,989 - Psest_3165 0.10 -1.8
3,337,989 - Psest_3165 0.10 -2.4
3,337,989 - Psest_3165 0.10 -0.5
3,337,989 - Psest_3165 0.10 -1.4
3,337,989 - Psest_3165 0.10 +0.0
3,337,989 - Psest_3165 0.10 +2.1
3,337,989 - Psest_3165 0.10 +0.6
3,337,989 - Psest_3165 0.10 -0.4
3,337,989 - Psest_3165 0.10 +0.0
3,337,989 - Psest_3165 0.10 +0.3
3,337,989 - Psest_3165 0.10 -0.7
3,337,989 - Psest_3165 0.10 +0.7
3,337,989 - Psest_3165 0.10 -3.5
3,337,989 - Psest_3165 0.10 -0.8
3,337,989 - Psest_3165 0.10 -0.4
3,337,990 + Psest_3165 0.10 -0.5
3,337,990 + Psest_3165 0.10 +0.3
3,337,990 + Psest_3165 0.10 +0.0
3,337,990 + Psest_3165 0.10 -1.9
3,337,990 + Psest_3165 0.10 -1.3
3,337,990 + Psest_3165 0.10 -0.7
3,337,990 + Psest_3165 0.10 +0.8
3,337,990 + Psest_3165 0.10 -0.8
3,337,990 + Psest_3165 0.10 +1.6
3,337,990 + Psest_3165 0.10 -2.4
3,337,990 + Psest_3165 0.10 -0.5
3,337,990 + Psest_3165 0.10 -2.4
3,337,990 + Psest_3165 0.10 -1.7
3,337,990 + Psest_3165 0.10 -1.0
3,337,990 + Psest_3165 0.10 +0.7
3,337,990 + Psest_3165 0.10 +0.2
3,337,990 + Psest_3165 0.10 -2.3
3,337,990 + Psest_3165 0.10 +1.2
3,337,990 + Psest_3165 0.10 -0.3
3,337,990 + Psest_3165 0.10 -0.2
3,337,990 + Psest_3165 0.10 -2.5
3,337,990 + Psest_3165 0.10 -0.7
3,337,990 + Psest_3165 0.10 +0.1
3,337,990 + Psest_3165 0.10 +0.7
3,337,990 + Psest_3165 0.10 -2.6
3,337,990 + Psest_3165 0.10 -2.1
3,337,990 + Psest_3165 0.10 +0.3
3,337,990 + Psest_3165 0.10 -1.4
3,337,990 + Psest_3165 0.10 -2.6
3,337,990 + Psest_3165 0.10 +0.3
3,337,990 + Psest_3165 0.10 -0.2
3,337,990 + Psest_3165 0.10 -0.6
3,337,990 + Psest_3165 0.10 -0.6
3,337,991 - Psest_3165 0.11 -0.9
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 +0.2
3,337,991 - Psest_3165 0.11 +1.2
3,337,991 - Psest_3165 0.11 +1.9
3,337,991 - Psest_3165 0.11 +2.2
3,337,991 - Psest_3165 0.11 +1.7
3,337,991 - Psest_3165 0.11 -0.1
3,337,991 - Psest_3165 0.11 +2.2
3,337,991 - Psest_3165 0.11 -1.9
3,337,991 - Psest_3165 0.11 +1.9
3,337,991 - Psest_3165 0.11 +0.6
3,337,991 - Psest_3165 0.11 -2.6
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 -2.4
3,337,991 - Psest_3165 0.11 +0.6
3,337,991 - Psest_3165 0.11 -2.6
3,337,991 - Psest_3165 0.11 -1.0
3,337,991 - Psest_3165 0.11 -1.7
3,337,991 - Psest_3165 0.11 +1.1
3,337,991 - Psest_3165 0.11 -2.7
3,337,991 - Psest_3165 0.11 -0.2
3,337,991 - Psest_3165 0.11 -0.1
3,337,991 - Psest_3165 0.11 -0.0
3,337,991 - Psest_3165 0.11 +1.2
3,337,991 - Psest_3165 0.11 -1.2
3,337,991 - Psest_3165 0.11 +0.8
3,337,991 - Psest_3165 0.11 -2.8
3,337,991 - Psest_3165 0.11 -2.2
3,338,013 - Psest_3165 0.13 +0.3
3,338,037 + Psest_3165 0.16 +0.3
3,338,053 + Psest_3165 0.18 +1.6
3,338,116 + Psest_3165 0.25 -0.3
3,338,219 + Psest_3165 0.37 -0.5
3,338,219 + Psest_3165 0.37 -0.4
3,338,219 + Psest_3165 0.37 +2.3
3,338,219 + Psest_3165 0.37 -1.6
3,338,219 + Psest_3165 0.37 -0.8
3,338,219 + Psest_3165 0.37 -1.0
3,338,219 + Psest_3165 0.37 -2.6
3,338,220 - Psest_3165 0.37 -0.8
3,338,220 - Psest_3165 0.37 +0.1
3,338,220 - Psest_3165 0.37 -0.2
3,338,220 - Psest_3165 0.37 +0.2
3,338,220 - Psest_3165 0.37 -0.6
3,338,322 + Psest_3165 0.49 -1.0
3,338,322 + Psest_3165 0.49 -2.5
3,338,322 + Psest_3165 0.49 -0.2
3,338,322 + Psest_3165 0.49 -1.9
3,338,322 + Psest_3165 0.49 +2.0
3,338,322 + Psest_3165 0.49 +0.0
3,338,322 + Psest_3165 0.49 +1.3
3,338,323 - Psest_3165 0.49 -2.8
3,338,323 - Psest_3165 0.49 +0.5
3,338,323 - Psest_3165 0.49 +0.5
3,338,323 - Psest_3165 0.49 +0.6
3,338,323 - Psest_3165 0.49 -0.5
3,338,323 - Psest_3165 0.49 +0.8
3,338,323 - Psest_3165 0.49 -2.4
3,338,323 - Psest_3165 0.49 +0.6
3,338,323 - Psest_3165 0.49 -2.0
3,338,323 - Psest_3165 0.49 +0.7
3,338,407 + Psest_3165 0.59 +0.8
3,338,407 + Psest_3165 0.59 -0.7
3,338,407 + Psest_3165 0.59 -1.4
3,338,566 - Psest_3165 0.77 +0.7
3,338,651 + Psest_3165 0.87 -1.2
3,338,696 + -0.2
3,338,696 + -2.4
3,338,697 - +0.3
3,338,697 - +1.7
3,338,720 - -2.6
3,338,720 - -1.7
3,338,810 + +1.5
3,338,810 + -0.7
3,338,810 + -0.3
3,338,811 - -0.7
3,338,834 - -0.5
3,338,834 - -2.4
3,338,834 - -0.2
3,338,877 - -1.3
3,339,018 + Psest_3166 0.11 +0.6
3,339,019 - Psest_3166 0.12 +1.8
3,339,099 - Psest_3166 0.17 +1.2
3,339,184 + Psest_3166 0.23 -0.2
3,339,185 - Psest_3166 0.23 -0.1
3,339,218 - Psest_3166 0.25 +0.1
3,339,285 + Psest_3166 0.30 -1.1
3,339,285 + Psest_3166 0.30 -0.0
3,339,335 - Psest_3166 0.34 -0.2
3,339,422 - Psest_3166 0.40 +1.3
3,339,422 - Psest_3166 0.40 -3.2
3,339,422 - Psest_3166 0.40 +0.0
3,339,422 - Psest_3166 0.40 -0.4
3,339,422 - Psest_3166 0.40 -0.1
3,339,422 - Psest_3166 0.40 +1.0

Or see this region's nucleotide sequence