Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2924 and Psest_2925 are separated by 2 nucleotides Psest_2925 and Psest_2926 are separated by 149 nucleotides Psest_2926 and Psest_2927 are separated by 2 nucleotides Psest_2927 and Psest_2928 are separated by 3 nucleotides
Psest_2924: Psest_2924 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,118,283 to 3,118,981
_2924
Psest_2925: Psest_2925 - Protein of unknown function (DUF1264)., at 3,118,984 to 3,119,799
_2925
Psest_2926: Psest_2926 - TIGR03440 family protein, at 3,119,949 to 3,121,244
_2926
Psest_2927: Psest_2927 - probable methyltransferase, at 3,121,247 to 3,122,209
_2927
Psest_2928: Psest_2928 - Subtilisin-like serine proteases, at 3,122,213 to 3,123,991
_2928
Position (kb)
3119
3120
3121
3122 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3118.980 kb on - strand at 3119.163 kb on + strand, within Psest_2925 at 3119.164 kb on - strand, within Psest_2925 at 3119.330 kb on + strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.415 kb on - strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.525 kb on + strand, within Psest_2925 at 3119.526 kb on - strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.729 kb on + strand at 3119.788 kb on + strand at 3119.789 kb on - strand at 3119.823 kb on + strand at 3119.824 kb on - strand at 3120.075 kb on + strand at 3120.075 kb on + strand at 3120.076 kb on - strand at 3120.076 kb on - strand at 3120.102 kb on - strand, within Psest_2926 at 3120.205 kb on - strand, within Psest_2926 at 3120.205 kb on - strand, within Psest_2926 at 3120.205 kb on - strand, within Psest_2926 at 3120.205 kb on - strand, within Psest_2926 at 3120.205 kb on - strand, within Psest_2926 at 3120.219 kb on + strand, within Psest_2926 at 3120.219 kb on + strand, within Psest_2926 at 3120.220 kb on - strand, within Psest_2926 at 3120.294 kb on + strand, within Psest_2926 at 3120.294 kb on + strand, within Psest_2926 at 3120.294 kb on + strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.660 kb on + strand, within Psest_2926 at 3120.760 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.852 kb on + strand, within Psest_2926 at 3120.867 kb on + strand, within Psest_2926 at 3120.964 kb on - strand, within Psest_2926 at 3121.095 kb on + strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.176 kb on + strand at 3121.364 kb on + strand, within Psest_2927 at 3121.365 kb on - strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.566 kb on - strand, within Psest_2927 at 3121.566 kb on - strand, within Psest_2927 at 3121.863 kb on - strand, within Psest_2927 at 3121.863 kb on - strand, within Psest_2927 at 3121.973 kb on + strand, within Psest_2927 at 3122.093 kb on + strand, within Psest_2927 at 3122.094 kb on - strand, within Psest_2927 at 3122.099 kb on + strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.192 kb on + strand at 3122.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 3,118,980 - +0.2 3,119,163 + Psest_2925 0.22 -2.1 3,119,164 - Psest_2925 0.22 +1.6 3,119,330 + Psest_2925 0.42 +2.1 3,119,331 - Psest_2925 0.43 -0.2 3,119,331 - Psest_2925 0.43 +0.1 3,119,331 - Psest_2925 0.43 +1.5 3,119,331 - Psest_2925 0.43 +1.2 3,119,415 - Psest_2925 0.53 -0.4 3,119,483 + Psest_2925 0.61 +0.5 3,119,483 + Psest_2925 0.61 +1.9 3,119,483 + Psest_2925 0.61 -1.8 3,119,483 + Psest_2925 0.61 +0.1 3,119,483 + Psest_2925 0.61 -0.4 3,119,484 - Psest_2925 0.61 +2.8 3,119,484 - Psest_2925 0.61 +1.4 3,119,484 - Psest_2925 0.61 +2.2 3,119,484 - Psest_2925 0.61 -0.1 3,119,484 - Psest_2925 0.61 -2.0 3,119,484 - Psest_2925 0.61 -0.3 3,119,484 - Psest_2925 0.61 -1.4 3,119,484 - Psest_2925 0.61 +0.7 3,119,484 - Psest_2925 0.61 -1.6 3,119,484 - Psest_2925 0.61 -0.4 3,119,484 - Psest_2925 0.61 +0.1 3,119,484 - Psest_2925 0.61 -0.5 3,119,525 + Psest_2925 0.66 -1.3 3,119,526 - Psest_2925 0.66 +0.7 3,119,567 + Psest_2925 0.71 -0.5 3,119,567 + Psest_2925 0.71 -1.6 3,119,567 + Psest_2925 0.71 -1.9 3,119,567 + Psest_2925 0.71 +0.5 3,119,568 - Psest_2925 0.72 +0.0 3,119,568 - Psest_2925 0.72 +1.5 3,119,568 - Psest_2925 0.72 -0.8 3,119,568 - Psest_2925 0.72 +1.3 3,119,606 + Psest_2925 0.76 -1.2 3,119,606 + Psest_2925 0.76 +0.0 3,119,606 + Psest_2925 0.76 +0.5 3,119,606 + Psest_2925 0.76 -0.2 3,119,606 + Psest_2925 0.76 +1.6 3,119,607 - Psest_2925 0.76 +0.8 3,119,607 - Psest_2925 0.76 +0.2 3,119,607 - Psest_2925 0.76 +0.7 3,119,729 + +0.6 3,119,788 + -0.7 3,119,789 - +2.4 3,119,823 + +2.0 3,119,824 - -1.7 3,120,075 + +1.4 3,120,075 + +1.7 3,120,076 - +1.3 3,120,076 - -2.2 3,120,102 - Psest_2926 0.12 +0.8 3,120,205 - Psest_2926 0.20 -0.3 3,120,205 - Psest_2926 0.20 -1.6 3,120,205 - Psest_2926 0.20 +0.5 3,120,205 - Psest_2926 0.20 -0.8 3,120,205 - Psest_2926 0.20 +0.9 3,120,219 + Psest_2926 0.21 +0.2 3,120,219 + Psest_2926 0.21 +1.4 3,120,220 - Psest_2926 0.21 -1.8 3,120,294 + Psest_2926 0.27 +1.9 3,120,294 + Psest_2926 0.27 -0.3 3,120,294 + Psest_2926 0.27 +1.9 3,120,295 - Psest_2926 0.27 +0.7 3,120,295 - Psest_2926 0.27 -1.9 3,120,295 - Psest_2926 0.27 +1.0 3,120,295 - Psest_2926 0.27 +2.0 3,120,660 + Psest_2926 0.55 +1.1 3,120,760 - Psest_2926 0.63 +0.3 3,120,850 - Psest_2926 0.70 +0.3 3,120,850 - Psest_2926 0.70 +2.4 3,120,850 - Psest_2926 0.70 -1.0 3,120,852 + Psest_2926 0.70 -0.9 3,120,867 + Psest_2926 0.71 +0.8 3,120,964 - Psest_2926 0.78 +1.3 3,121,095 + Psest_2926 0.88 -0.8 3,121,096 - Psest_2926 0.89 +1.0 3,121,096 - Psest_2926 0.89 -1.0 3,121,096 - Psest_2926 0.89 +1.0 3,121,096 - Psest_2926 0.89 +0.9 3,121,096 - Psest_2926 0.89 -1.1 3,121,176 + +1.6 3,121,364 + Psest_2927 0.12 +0.8 3,121,365 - Psest_2927 0.12 -0.3 3,121,415 + Psest_2927 0.17 +0.1 3,121,415 + Psest_2927 0.17 +1.7 3,121,415 + Psest_2927 0.17 +1.1 3,121,418 + Psest_2927 0.18 +1.4 3,121,418 + Psest_2927 0.18 +1.0 3,121,418 + Psest_2927 0.18 +1.1 3,121,418 + Psest_2927 0.18 -1.0 3,121,418 + Psest_2927 0.18 +0.7 3,121,418 + Psest_2927 0.18 -0.5 3,121,418 + Psest_2927 0.18 +0.7 3,121,418 + Psest_2927 0.18 -0.3 3,121,419 - Psest_2927 0.18 -1.9 3,121,419 - Psest_2927 0.18 +0.3 3,121,419 - Psest_2927 0.18 +2.0 3,121,419 - Psest_2927 0.18 -1.0 3,121,419 - Psest_2927 0.18 +1.3 3,121,419 - Psest_2927 0.18 -1.3 3,121,419 - Psest_2927 0.18 -0.1 3,121,566 - Psest_2927 0.33 +0.9 3,121,566 - Psest_2927 0.33 -0.3 3,121,863 - Psest_2927 0.64 +1.2 3,121,863 - Psest_2927 0.64 +1.9 3,121,973 + Psest_2927 0.75 +1.0 3,122,093 + Psest_2927 0.88 -0.4 3,122,094 - Psest_2927 0.88 +0.4 3,122,099 + Psest_2927 0.88 -1.7 3,122,100 - Psest_2927 0.89 -1.1 3,122,100 - Psest_2927 0.89 +0.7 3,122,100 - Psest_2927 0.89 +0.6 3,122,100 - Psest_2927 0.89 +0.2 3,122,100 - Psest_2927 0.89 +0.6 3,122,100 - Psest_2927 0.89 -0.7 3,122,100 - Psest_2927 0.89 +0.9 3,122,100 - Psest_2927 0.89 +1.8 3,122,192 + -1.2 3,122,193 - +0.8
Or see this region's nucleotide sequence