Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2857 and Psest_2858 are separated by 86 nucleotides Psest_2858 and Psest_2859 are separated by 58 nucleotides Psest_2859 and Psest_2860 are separated by 132 nucleotides Psest_2860 and Psest_2861 are separated by 1 nucleotides
Psest_2857: Psest_2857 - Rad3-related DNA helicases, at 3,047,681 to 3,049,825
_2857
Psest_2858: Psest_2858 - Predicted integral membrane protein, at 3,049,912 to 3,050,376
_2858
Psest_2859: Psest_2859 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,050,435 to 3,051,073
_2859
Psest_2860: Psest_2860 - hypothetical protein, at 3,051,206 to 3,051,703
_2860
Psest_2861: Psest_2861 - Uncharacterized protein conserved in bacteria, at 3,051,705 to 3,052,190
_2861
Position (kb)
3050
3051
3052 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3049.591 kb on + strand, within Psest_2857 at 3049.592 kb on - strand, within Psest_2857 at 3049.592 kb on - strand, within Psest_2857 at 3049.612 kb on - strand at 3049.785 kb on + strand at 3049.839 kb on + strand at 3049.840 kb on - strand at 3049.840 kb on - strand at 3049.840 kb on - strand at 3049.840 kb on - strand at 3049.840 kb on - strand at 3049.840 kb on - strand at 3049.841 kb on + strand at 3049.841 kb on + strand at 3049.842 kb on - strand at 3049.843 kb on + strand at 3049.844 kb on - strand at 3049.940 kb on + strand at 3049.940 kb on + strand at 3049.940 kb on + strand at 3049.940 kb on + strand at 3049.941 kb on - strand at 3049.941 kb on - strand at 3049.941 kb on - strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.946 kb on + strand at 3049.947 kb on + strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3049.947 kb on - strand at 3050.058 kb on - strand, within Psest_2858 at 3050.058 kb on - strand, within Psest_2858 at 3050.058 kb on - strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.168 kb on + strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.169 kb on - strand, within Psest_2858 at 3050.188 kb on + strand, within Psest_2858 at 3050.188 kb on + strand, within Psest_2858 at 3050.189 kb on - strand, within Psest_2858 at 3050.346 kb on - strand at 3050.374 kb on + strand at 3050.563 kb on - strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.622 kb on + strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.623 kb on - strand, within Psest_2859 at 3050.679 kb on + strand, within Psest_2859 at 3050.735 kb on + strand, within Psest_2859 at 3050.735 kb on + strand, within Psest_2859 at 3050.736 kb on - strand, within Psest_2859 at 3050.736 kb on - strand, within Psest_2859 at 3050.736 kb on - strand, within Psest_2859 at 3050.736 kb on - strand, within Psest_2859 at 3050.736 kb on - strand, within Psest_2859 at 3050.880 kb on + strand, within Psest_2859 at 3050.880 kb on + strand, within Psest_2859 at 3050.881 kb on - strand, within Psest_2859 at 3050.881 kb on - strand, within Psest_2859 at 3050.881 kb on - strand, within Psest_2859 at 3050.926 kb on - strand, within Psest_2859 at 3050.973 kb on - strand, within Psest_2859 at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.067 kb on + strand at 3051.068 kb on + strand at 3051.068 kb on - strand at 3051.068 kb on - strand at 3051.068 kb on - strand at 3051.141 kb on + strand at 3051.152 kb on + strand at 3051.176 kb on - strand at 3051.222 kb on + strand at 3051.266 kb on + strand, within Psest_2860 at 3051.285 kb on + strand, within Psest_2860 at 3051.285 kb on + strand, within Psest_2860 at 3051.548 kb on + strand, within Psest_2860 at 3051.549 kb on - strand, within Psest_2860 at 3051.549 kb on - strand, within Psest_2860 at 3051.549 kb on - strand, within Psest_2860 at 3051.549 kb on - strand, within Psest_2860 at 3051.614 kb on + strand, within Psest_2860 at 3051.615 kb on - strand, within Psest_2860 at 3051.629 kb on + strand, within Psest_2860 at 3051.629 kb on + strand, within Psest_2860 at 3051.630 kb on - strand, within Psest_2860 at 3051.692 kb on + strand at 3051.692 kb on + strand at 3051.731 kb on + strand at 3051.732 kb on - strand at 3051.780 kb on + strand, within Psest_2861 at 3051.780 kb on + strand, within Psest_2861 at 3051.781 kb on - strand, within Psest_2861 at 3051.814 kb on + strand, within Psest_2861 at 3051.814 kb on + strand, within Psest_2861 at 3051.840 kb on + strand, within Psest_2861 at 3051.840 kb on + strand, within Psest_2861 at 3051.840 kb on + strand, within Psest_2861 at 3051.840 kb on + strand, within Psest_2861 at 3051.840 kb on + strand, within Psest_2861 at 3051.841 kb on - strand, within Psest_2861 at 3051.841 kb on - strand, within Psest_2861 at 3051.861 kb on + strand, within Psest_2861 at 3051.861 kb on + strand, within Psest_2861 at 3051.862 kb on - strand, within Psest_2861 at 3051.862 kb on - strand, within Psest_2861 at 3051.973 kb on + strand, within Psest_2861 at 3051.973 kb on + strand, within Psest_2861 at 3051.973 kb on + strand, within Psest_2861 at 3051.973 kb on + strand, within Psest_2861 at 3051.973 kb on + strand, within Psest_2861 at 3051.974 kb on - strand, within Psest_2861 at 3051.974 kb on - strand, within Psest_2861 at 3051.974 kb on - strand, within Psest_2861
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 3,049,591 + Psest_2857 0.89 +0.7 3,049,592 - Psest_2857 0.89 -2.9 3,049,592 - Psest_2857 0.89 +1.5 3,049,612 - -0.0 3,049,785 + +0.5 3,049,839 + +0.2 3,049,840 - -1.2 3,049,840 - +2.2 3,049,840 - -2.0 3,049,840 - -1.9 3,049,840 - -0.3 3,049,840 - -0.2 3,049,841 + -0.8 3,049,841 + +0.3 3,049,842 - -1.1 3,049,843 + -0.3 3,049,844 - +1.8 3,049,940 + -0.5 3,049,940 + +0.6 3,049,940 + -0.8 3,049,940 + +1.2 3,049,941 - +0.3 3,049,941 - -2.2 3,049,941 - -2.4 3,049,946 + +0.0 3,049,946 + -1.1 3,049,946 + +1.5 3,049,946 + -0.1 3,049,946 + -2.7 3,049,946 + +1.9 3,049,946 + +0.1 3,049,946 + -2.0 3,049,946 + -2.9 3,049,946 + -0.8 3,049,947 + +0.8 3,049,947 - -1.5 3,049,947 - -2.2 3,049,947 - +0.9 3,049,947 - +1.9 3,049,947 - -2.9 3,049,947 - -1.7 3,049,947 - +1.8 3,050,058 - Psest_2858 0.31 -2.7 3,050,058 - Psest_2858 0.31 -3.0 3,050,058 - Psest_2858 0.31 -3.5 3,050,168 + Psest_2858 0.55 +1.3 3,050,168 + Psest_2858 0.55 +0.1 3,050,168 + Psest_2858 0.55 -0.6 3,050,168 + Psest_2858 0.55 +0.3 3,050,168 + Psest_2858 0.55 +0.3 3,050,168 + Psest_2858 0.55 -1.5 3,050,168 + Psest_2858 0.55 +1.2 3,050,168 + Psest_2858 0.55 +0.4 3,050,168 + Psest_2858 0.55 +0.1 3,050,168 + Psest_2858 0.55 -2.7 3,050,168 + Psest_2858 0.55 +1.5 3,050,168 + Psest_2858 0.55 -2.4 3,050,168 + Psest_2858 0.55 -2.4 3,050,168 + Psest_2858 0.55 +1.8 3,050,168 + Psest_2858 0.55 +0.6 3,050,168 + Psest_2858 0.55 +0.6 3,050,168 + Psest_2858 0.55 +1.9 3,050,168 + Psest_2858 0.55 +1.2 3,050,168 + Psest_2858 0.55 -0.4 3,050,169 - Psest_2858 0.55 -2.1 3,050,169 - Psest_2858 0.55 +1.1 3,050,169 - Psest_2858 0.55 -0.9 3,050,169 - Psest_2858 0.55 +1.4 3,050,169 - Psest_2858 0.55 -1.1 3,050,169 - Psest_2858 0.55 +0.1 3,050,169 - Psest_2858 0.55 +1.3 3,050,169 - Psest_2858 0.55 -0.5 3,050,169 - Psest_2858 0.55 -0.2 3,050,169 - Psest_2858 0.55 -1.2 3,050,169 - Psest_2858 0.55 -1.9 3,050,169 - Psest_2858 0.55 +1.3 3,050,169 - Psest_2858 0.55 -1.3 3,050,169 - Psest_2858 0.55 -1.1 3,050,169 - Psest_2858 0.55 -0.5 3,050,169 - Psest_2858 0.55 -0.1 3,050,169 - Psest_2858 0.55 +2.0 3,050,169 - Psest_2858 0.55 -0.6 3,050,188 + Psest_2858 0.59 +0.3 3,050,188 + Psest_2858 0.59 +2.3 3,050,189 - Psest_2858 0.60 -1.5 3,050,346 - -0.5 3,050,374 + -0.0 3,050,563 - Psest_2859 0.20 -0.2 3,050,622 + Psest_2859 0.29 -1.2 3,050,622 + Psest_2859 0.29 +2.1 3,050,622 + Psest_2859 0.29 -1.1 3,050,622 + Psest_2859 0.29 -1.2 3,050,622 + Psest_2859 0.29 +0.9 3,050,622 + Psest_2859 0.29 -1.6 3,050,622 + Psest_2859 0.29 -0.7 3,050,623 - Psest_2859 0.29 +0.2 3,050,623 - Psest_2859 0.29 -0.7 3,050,623 - Psest_2859 0.29 +1.8 3,050,623 - Psest_2859 0.29 +0.9 3,050,623 - Psest_2859 0.29 +1.1 3,050,623 - Psest_2859 0.29 +0.1 3,050,623 - Psest_2859 0.29 +1.0 3,050,679 + Psest_2859 0.38 -0.2 3,050,735 + Psest_2859 0.47 -0.1 3,050,735 + Psest_2859 0.47 +0.9 3,050,736 - Psest_2859 0.47 +0.7 3,050,736 - Psest_2859 0.47 +2.0 3,050,736 - Psest_2859 0.47 +1.2 3,050,736 - Psest_2859 0.47 +1.0 3,050,736 - Psest_2859 0.47 -1.8 3,050,880 + Psest_2859 0.70 +1.6 3,050,880 + Psest_2859 0.70 +1.8 3,050,881 - Psest_2859 0.70 +3.6 3,050,881 - Psest_2859 0.70 -1.8 3,050,881 - Psest_2859 0.70 +0.8 3,050,926 - Psest_2859 0.77 +0.2 3,050,973 - Psest_2859 0.84 +3.3 3,051,067 + -1.5 3,051,067 + -2.4 3,051,067 + +0.1 3,051,067 + +1.0 3,051,067 + +0.5 3,051,067 + +0.3 3,051,067 + +1.4 3,051,068 + -0.5 3,051,068 - -0.4 3,051,068 - -0.5 3,051,068 - -1.9 3,051,141 + -0.9 3,051,152 + -0.1 3,051,176 - +1.0 3,051,222 + +0.7 3,051,266 + Psest_2860 0.12 -0.9 3,051,285 + Psest_2860 0.16 +1.3 3,051,285 + Psest_2860 0.16 -0.5 3,051,548 + Psest_2860 0.69 +0.1 3,051,549 - Psest_2860 0.69 +1.7 3,051,549 - Psest_2860 0.69 +0.3 3,051,549 - Psest_2860 0.69 -0.7 3,051,549 - Psest_2860 0.69 +0.1 3,051,614 + Psest_2860 0.82 -0.6 3,051,615 - Psest_2860 0.82 +1.1 3,051,629 + Psest_2860 0.85 +0.7 3,051,629 + Psest_2860 0.85 -2.9 3,051,630 - Psest_2860 0.85 +1.9 3,051,692 + +0.3 3,051,692 + +0.1 3,051,731 + +0.9 3,051,732 - +1.1 3,051,780 + Psest_2861 0.15 -2.2 3,051,780 + Psest_2861 0.15 -1.1 3,051,781 - Psest_2861 0.16 -0.8 3,051,814 + Psest_2861 0.22 -0.6 3,051,814 + Psest_2861 0.22 -2.4 3,051,840 + Psest_2861 0.28 -1.1 3,051,840 + Psest_2861 0.28 +0.1 3,051,840 + Psest_2861 0.28 +1.5 3,051,840 + Psest_2861 0.28 -0.6 3,051,840 + Psest_2861 0.28 +0.4 3,051,841 - Psest_2861 0.28 -1.4 3,051,841 - Psest_2861 0.28 -0.6 3,051,861 + Psest_2861 0.32 -2.1 3,051,861 + Psest_2861 0.32 +0.5 3,051,862 - Psest_2861 0.32 +0.7 3,051,862 - Psest_2861 0.32 +2.4 3,051,973 + Psest_2861 0.55 +3.3 3,051,973 + Psest_2861 0.55 +1.3 3,051,973 + Psest_2861 0.55 -0.4 3,051,973 + Psest_2861 0.55 +0.5 3,051,973 + Psest_2861 0.55 -0.2 3,051,974 - Psest_2861 0.55 +0.6 3,051,974 - Psest_2861 0.55 +1.3 3,051,974 - Psest_2861 0.55 -0.0
Or see this region's nucleotide sequence