Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2794

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2792 and Psest_2793 are separated by 154 nucleotidesPsest_2793 and Psest_2794 are separated by 39 nucleotidesPsest_2794 and Psest_2795 are separated by 215 nucleotides Psest_2792: Psest_2792 - Uncharacterized protein conserved in bacteria, at 2,985,148 to 2,985,846 _2792 Psest_2793: Psest_2793 - hypothetical protein, at 2,986,001 to 2,986,138 _2793 Psest_2794: Psest_2794 - Predicted permease, DMT superfamily, at 2,986,178 to 2,987,062 _2794 Psest_2795: Psest_2795 - Uncharacterized conserved protein, at 2,987,278 to 2,987,976 _2795 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2985.222 kb on + strand, within Psest_2792at 2985.287 kb on + strand, within Psest_2792at 2985.350 kb on - strand, within Psest_2792at 2985.364 kb on + strand, within Psest_2792at 2985.365 kb on - strand, within Psest_2792at 2985.464 kb on + strand, within Psest_2792at 2985.464 kb on + strand, within Psest_2792at 2985.465 kb on - strand, within Psest_2792at 2985.465 kb on - strand, within Psest_2792at 2985.465 kb on - strand, within Psest_2792at 2985.465 kb on - strand, within Psest_2792at 2985.503 kb on + strand, within Psest_2792at 2985.504 kb on - strand, within Psest_2792at 2985.504 kb on - strand, within Psest_2792at 2985.504 kb on - strand, within Psest_2792at 2985.504 kb on - strand, within Psest_2792at 2985.659 kb on + strand, within Psest_2792at 2985.659 kb on + strand, within Psest_2792at 2985.785 kb on + strandat 2985.785 kb on + strandat 2985.799 kb on + strandat 2985.863 kb on + strandat 2985.863 kb on + strandat 2985.863 kb on + strandat 2985.863 kb on + strandat 2985.864 kb on - strandat 2985.864 kb on - strandat 2985.864 kb on - strandat 2985.864 kb on - strandat 2985.864 kb on - strandat 2985.864 kb on - strandat 2985.890 kb on + strandat 2986.069 kb on + strand, within Psest_2793at 2986.069 kb on + strand, within Psest_2793at 2986.069 kb on + strand, within Psest_2793at 2986.069 kb on + strand, within Psest_2793at 2986.069 kb on + strand, within Psest_2793at 2986.394 kb on - strand, within Psest_2794at 2986.394 kb on - strand, within Psest_2794at 2986.396 kb on - strand, within Psest_2794at 2986.396 kb on - strand, within Psest_2794at 2986.396 kb on - strand, within Psest_2794at 2986.425 kb on + strand, within Psest_2794at 2986.425 kb on + strand, within Psest_2794at 2986.426 kb on - strand, within Psest_2794at 2986.463 kb on + strand, within Psest_2794at 2986.564 kb on + strand, within Psest_2794at 2986.592 kb on - strand, within Psest_2794at 2987.122 kb on + strandat 2987.123 kb on - strandat 2987.235 kb on + strandat 2987.235 kb on + strandat 2987.235 kb on + strandat 2987.235 kb on + strandat 2987.236 kb on - strandat 2987.236 kb on - strandat 2987.236 kb on - strandat 2987.236 kb on - strandat 2987.257 kb on + strandat 2987.258 kb on - strandat 2987.304 kb on + strandat 2987.305 kb on - strandat 2987.305 kb on - strandat 2987.832 kb on + strand, within Psest_2795at 2987.957 kb on - strandat 2987.957 kb on - strandat 2987.957 kb on - strandat 2987.957 kb on - strandat 2987.957 kb on - strandat 2987.957 kb on - strandat 2987.989 kb on + strandat 2988.048 kb on + strandat 2988.048 kb on + strandat 2988.049 kb on - strandat 2988.049 kb on - strandat 2988.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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2,985,222 + Psest_2792 0.11 +1.2
2,985,287 + Psest_2792 0.20 -0.5
2,985,350 - Psest_2792 0.29 -2.2
2,985,364 + Psest_2792 0.31 +1.6
2,985,365 - Psest_2792 0.31 +0.3
2,985,464 + Psest_2792 0.45 -1.9
2,985,464 + Psest_2792 0.45 +0.6
2,985,465 - Psest_2792 0.45 -0.2
2,985,465 - Psest_2792 0.45 +0.2
2,985,465 - Psest_2792 0.45 +0.1
2,985,465 - Psest_2792 0.45 +0.5
2,985,503 + Psest_2792 0.51 -0.2
2,985,504 - Psest_2792 0.51 -1.2
2,985,504 - Psest_2792 0.51 -0.4
2,985,504 - Psest_2792 0.51 +0.4
2,985,504 - Psest_2792 0.51 +0.6
2,985,659 + Psest_2792 0.73 +2.6
2,985,659 + Psest_2792 0.73 +2.0
2,985,785 + +0.2
2,985,785 + +0.8
2,985,799 + +0.5
2,985,863 + -0.3
2,985,863 + -0.8
2,985,863 + -0.9
2,985,863 + -1.4
2,985,864 - +2.2
2,985,864 - -2.5
2,985,864 - -1.1
2,985,864 - -1.8
2,985,864 - -0.3
2,985,864 - -3.1
2,985,890 + -0.9
2,986,069 + Psest_2793 0.49 -0.3
2,986,069 + Psest_2793 0.49 -0.9
2,986,069 + Psest_2793 0.49 +1.0
2,986,069 + Psest_2793 0.49 -2.0
2,986,069 + Psest_2793 0.49 +0.6
2,986,394 - Psest_2794 0.24 -2.9
2,986,394 - Psest_2794 0.24 +0.6
2,986,396 - Psest_2794 0.25 -0.0
2,986,396 - Psest_2794 0.25 -2.2
2,986,396 - Psest_2794 0.25 -1.2
2,986,425 + Psest_2794 0.28 -2.9
2,986,425 + Psest_2794 0.28 -0.1
2,986,426 - Psest_2794 0.28 +0.2
2,986,463 + Psest_2794 0.32 +0.8
2,986,564 + Psest_2794 0.44 -2.1
2,986,592 - Psest_2794 0.47 -1.6
2,987,122 + +0.4
2,987,123 - -1.0
2,987,235 + -2.4
2,987,235 + -0.1
2,987,235 + +1.1
2,987,235 + +1.3
2,987,236 - -0.3
2,987,236 - -3.1
2,987,236 - +0.8
2,987,236 - -2.0
2,987,257 + -0.1
2,987,258 - -1.0
2,987,304 + +0.2
2,987,305 - -3.6
2,987,305 - +0.6
2,987,832 + Psest_2795 0.79 -0.1
2,987,957 - +1.5
2,987,957 - +2.4
2,987,957 - -0.1
2,987,957 - +0.6
2,987,957 - +0.3
2,987,957 - +1.0
2,987,989 + -0.2
2,988,048 + -0.5
2,988,048 + +0.1
2,988,049 - -0.8
2,988,049 - -0.6
2,988,049 - -1.2

Or see this region's nucleotide sequence