Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2509 and Psest_2510 are separated by 181 nucleotides Psest_2510 and Psest_2511 are separated by 241 nucleotides
Psest_2509: Psest_2509 - cell division protein ZipA, at 2,684,769 to 2,685,590
_2509
Psest_2510: Psest_2510 - chromosome segregation protein SMC, common bacterial type, at 2,685,772 to 2,689,260
_2510
Psest_2511: Psest_2511 - molybdenum cofactor biosynthesis protein A, bacterial, at 2,689,502 to 2,690,497
_2511
Position (kb)
2685
2686
2687
2688
2689
2690 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2685.619 kb on - strand at 2685.900 kb on - strand at 2685.900 kb on - strand at 2685.900 kb on - strand at 2685.900 kb on - strand at 2685.900 kb on - strand at 2685.945 kb on - strand at 2686.136 kb on - strand, within Psest_2510 at 2686.694 kb on - strand, within Psest_2510 at 2686.694 kb on - strand, within Psest_2510 at 2686.758 kb on + strand, within Psest_2510 at 2687.232 kb on + strand, within Psest_2510 at 2687.233 kb on - strand, within Psest_2510 at 2687.233 kb on - strand, within Psest_2510 at 2687.233 kb on - strand, within Psest_2510 at 2687.233 kb on - strand, within Psest_2510 at 2687.233 kb on - strand, within Psest_2510 at 2687.555 kb on - strand, within Psest_2510 at 2687.555 kb on - strand, within Psest_2510 at 2687.555 kb on - strand, within Psest_2510 at 2687.617 kb on + strand, within Psest_2510 at 2687.618 kb on - strand, within Psest_2510 at 2688.599 kb on + strand, within Psest_2510 at 2688.599 kb on + strand, within Psest_2510 at 2688.599 kb on + strand, within Psest_2510 at 2688.599 kb on + strand, within Psest_2510 at 2688.599 kb on + strand, within Psest_2510 at 2688.600 kb on - strand, within Psest_2510 at 2688.600 kb on - strand, within Psest_2510 at 2688.600 kb on - strand, within Psest_2510 at 2688.600 kb on - strand, within Psest_2510 at 2688.608 kb on + strand, within Psest_2510 at 2688.608 kb on + strand, within Psest_2510 at 2688.609 kb on - strand, within Psest_2510 at 2688.609 kb on - strand, within Psest_2510 at 2688.609 kb on - strand, within Psest_2510 at 2688.609 kb on - strand, within Psest_2510 at 2688.609 kb on - strand, within Psest_2510 at 2688.743 kb on + strand, within Psest_2510 at 2688.743 kb on + strand, within Psest_2510 at 2688.743 kb on + strand, within Psest_2510 at 2688.743 kb on + strand, within Psest_2510 at 2688.744 kb on - strand, within Psest_2510 at 2688.744 kb on - strand, within Psest_2510 at 2688.744 kb on - strand, within Psest_2510 at 2688.744 kb on - strand, within Psest_2510 at 2688.744 kb on - strand, within Psest_2510 at 2688.843 kb on + strand, within Psest_2510 at 2688.843 kb on + strand, within Psest_2510 at 2688.844 kb on - strand, within Psest_2510 at 2688.844 kb on - strand, within Psest_2510 at 2688.917 kb on + strand at 2688.917 kb on + strand at 2688.917 kb on + strand at 2688.918 kb on - strand at 2688.918 kb on - strand at 2688.918 kb on - strand at 2688.918 kb on - strand at 2688.918 kb on - strand at 2688.921 kb on + strand at 2688.921 kb on + strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.922 kb on - strand at 2688.977 kb on + strand at 2689.143 kb on + strand at 2689.144 kb on - strand at 2689.375 kb on + strand at 2689.441 kb on + strand at 2689.441 kb on + strand at 2689.441 kb on + strand at 2689.442 kb on - strand at 2689.442 kb on - strand at 2689.442 kb on - strand at 2689.442 kb on - strand at 2689.442 kb on - strand at 2689.442 kb on - strand at 2689.710 kb on - strand, within Psest_2511 at 2689.754 kb on - strand, within Psest_2511 at 2689.791 kb on + strand, within Psest_2511 at 2689.834 kb on + strand, within Psest_2511 at 2689.835 kb on - strand, within Psest_2511 at 2690.018 kb on + strand, within Psest_2511 at 2690.018 kb on + strand, within Psest_2511 at 2690.019 kb on - strand, within Psest_2511
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 2,685,619 - -0.8 2,685,900 - -0.3 2,685,900 - +2.6 2,685,900 - -1.1 2,685,900 - -1.3 2,685,900 - +2.6 2,685,945 - -0.1 2,686,136 - Psest_2510 0.10 +1.9 2,686,694 - Psest_2510 0.26 +2.2 2,686,694 - Psest_2510 0.26 +1.3 2,686,758 + Psest_2510 0.28 +1.8 2,687,232 + Psest_2510 0.42 -2.6 2,687,233 - Psest_2510 0.42 +1.0 2,687,233 - Psest_2510 0.42 -0.8 2,687,233 - Psest_2510 0.42 -0.4 2,687,233 - Psest_2510 0.42 -2.4 2,687,233 - Psest_2510 0.42 +1.9 2,687,555 - Psest_2510 0.51 -1.7 2,687,555 - Psest_2510 0.51 -3.0 2,687,555 - Psest_2510 0.51 +2.4 2,687,617 + Psest_2510 0.53 -1.9 2,687,618 - Psest_2510 0.53 +1.2 2,688,599 + Psest_2510 0.81 +0.5 2,688,599 + Psest_2510 0.81 -0.3 2,688,599 + Psest_2510 0.81 +0.5 2,688,599 + Psest_2510 0.81 -0.8 2,688,599 + Psest_2510 0.81 +1.4 2,688,600 - Psest_2510 0.81 -0.5 2,688,600 - Psest_2510 0.81 +1.3 2,688,600 - Psest_2510 0.81 -1.4 2,688,600 - Psest_2510 0.81 +0.8 2,688,608 + Psest_2510 0.81 -0.5 2,688,608 + Psest_2510 0.81 -1.5 2,688,609 - Psest_2510 0.81 +1.5 2,688,609 - Psest_2510 0.81 -2.9 2,688,609 - Psest_2510 0.81 +1.4 2,688,609 - Psest_2510 0.81 +0.4 2,688,609 - Psest_2510 0.81 -1.0 2,688,743 + Psest_2510 0.85 -0.3 2,688,743 + Psest_2510 0.85 -1.1 2,688,743 + Psest_2510 0.85 -0.4 2,688,743 + Psest_2510 0.85 -0.3 2,688,744 - Psest_2510 0.85 -3.0 2,688,744 - Psest_2510 0.85 -0.0 2,688,744 - Psest_2510 0.85 -2.0 2,688,744 - Psest_2510 0.85 -0.4 2,688,744 - Psest_2510 0.85 +1.8 2,688,843 + Psest_2510 0.88 +0.6 2,688,843 + Psest_2510 0.88 -0.9 2,688,844 - Psest_2510 0.88 -1.1 2,688,844 - Psest_2510 0.88 +1.3 2,688,917 + -1.9 2,688,917 + -0.4 2,688,917 + +0.1 2,688,918 - +1.8 2,688,918 - -0.5 2,688,918 - +0.5 2,688,918 - -0.2 2,688,918 - +0.0 2,688,921 + -1.7 2,688,921 + -2.9 2,688,922 - -0.9 2,688,922 - +1.7 2,688,922 - -0.6 2,688,922 - -0.4 2,688,922 - -0.7 2,688,922 - +0.7 2,688,922 - -0.4 2,688,922 - -0.7 2,688,977 + -0.3 2,689,143 + +4.7 2,689,144 - +0.0 2,689,375 + +2.3 2,689,441 + -0.1 2,689,441 + +1.6 2,689,441 + +1.0 2,689,442 - +1.2 2,689,442 - +1.2 2,689,442 - -1.3 2,689,442 - +0.7 2,689,442 - +1.3 2,689,442 - +1.2 2,689,710 - Psest_2511 0.21 +0.9 2,689,754 - Psest_2511 0.25 +0.2 2,689,791 + Psest_2511 0.29 -0.2 2,689,834 + Psest_2511 0.33 +0.4 2,689,835 - Psest_2511 0.33 +2.6 2,690,018 + Psest_2511 0.52 +0.8 2,690,018 + Psest_2511 0.52 -0.5 2,690,019 - Psest_2511 0.52 +0.9
Or see this region's nucleotide sequence