Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2283

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2281 and Psest_2282 overlap by 8 nucleotidesPsest_2282 and Psest_2283 are separated by 102 nucleotidesPsest_2283 and Psest_2284 are separated by 205 nucleotidesPsest_2284 and Psest_2285 are separated by 130 nucleotides Psest_2281: Psest_2281 - Phosphoserine aminotransferase, at 2,429,259 to 2,430,359 _2281 Psest_2282: Psest_2282 - Dihydroorotate dehydrogenase, at 2,430,352 to 2,431,197 _2282 Psest_2283: Psest_2283 - Parvulin-like peptidyl-prolyl isomerase, at 2,431,300 to 2,433,156 _2283 Psest_2284: Psest_2284 - Bacterial nucleoid DNA-binding protein, at 2,433,362 to 2,433,634 _2284 Psest_2285: Psest_2285 - ATP-dependent protease La, at 2,433,765 to 2,436,161 _2285 Position (kb) 2431 2432 2433 2434Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2430.347 kb on + strandat 2430.348 kb on - strandat 2430.357 kb on + strandat 2430.358 kb on - strandat 2430.479 kb on + strand, within Psest_2282at 2430.479 kb on + strand, within Psest_2282at 2430.722 kb on - strand, within Psest_2282at 2430.866 kb on + strand, within Psest_2282at 2430.939 kb on - strand, within Psest_2282at 2433.364 kb on - strandat 2433.364 kb on - strandat 2433.364 kb on - strandat 2433.683 kb on - strandat 2433.683 kb on - strandat 2433.698 kb on - strandat 2433.706 kb on - strandat 2433.767 kb on - strandat 2433.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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2,430,347 + -0.7
2,430,348 - -3.5
2,430,357 + +0.4
2,430,358 - +0.7
2,430,479 + Psest_2282 0.15 -1.5
2,430,479 + Psest_2282 0.15 +0.6
2,430,722 - Psest_2282 0.44 +0.1
2,430,866 + Psest_2282 0.61 -0.7
2,430,939 - Psest_2282 0.69 -2.4
2,433,364 - +1.8
2,433,364 - -1.2
2,433,364 - -1.1
2,433,683 - +0.7
2,433,683 - -0.7
2,433,698 - +1.1
2,433,706 - +0.3
2,433,767 - +0.9
2,433,860 - -0.2

Or see this region's nucleotide sequence