Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2167 and Psest_2168 are separated by 98 nucleotides Psest_2168 and Psest_2169 are separated by 22 nucleotides
Psest_2167: Psest_2167 - glycogen debranching enzyme GlgX, at 2,319,572 to 2,321,722
_2167
Psest_2168: Psest_2168 - Protein of unknown function (DUF2934)., at 2,321,821 to 2,322,150
_2168
Psest_2169: Psest_2169 - malto-oligosyltrehalose synthase, at 2,322,173 to 2,324,959
_2169
Position (kb)
2321
2322
2323 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2320.873 kb on - strand, within Psest_2167 at 2320.873 kb on - strand, within Psest_2167 at 2320.959 kb on + strand, within Psest_2167 at 2320.960 kb on - strand, within Psest_2167 at 2320.960 kb on - strand, within Psest_2167 at 2320.960 kb on - strand, within Psest_2167 at 2320.995 kb on + strand, within Psest_2167 at 2320.995 kb on + strand, within Psest_2167 at 2320.996 kb on - strand, within Psest_2167 at 2321.004 kb on + strand, within Psest_2167 at 2321.097 kb on + strand, within Psest_2167 at 2321.183 kb on + strand, within Psest_2167 at 2321.183 kb on + strand, within Psest_2167 at 2321.183 kb on + strand, within Psest_2167 at 2321.183 kb on + strand, within Psest_2167 at 2321.183 kb on + strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.184 kb on - strand, within Psest_2167 at 2321.196 kb on + strand, within Psest_2167 at 2321.454 kb on + strand, within Psest_2167 at 2321.469 kb on + strand, within Psest_2167 at 2321.469 kb on + strand, within Psest_2167 at 2321.499 kb on + strand, within Psest_2167 at 2321.500 kb on - strand, within Psest_2167 at 2321.500 kb on - strand, within Psest_2167 at 2321.523 kb on + strand at 2322.175 kb on - strand at 2322.175 kb on - strand at 2322.175 kb on - strand at 2322.175 kb on - strand at 2322.175 kb on - strand at 2322.175 kb on - strand at 2322.178 kb on + strand at 2322.178 kb on + strand at 2322.178 kb on + strand at 2322.179 kb on - strand at 2322.179 kb on - strand at 2322.184 kb on + strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.185 kb on - strand at 2322.466 kb on + strand, within Psest_2169 at 2322.526 kb on + strand, within Psest_2169 at 2322.526 kb on + strand, within Psest_2169 at 2322.527 kb on - strand, within Psest_2169 at 2322.527 kb on - strand, within Psest_2169 at 2322.687 kb on + strand, within Psest_2169 at 2322.834 kb on + strand, within Psest_2169 at 2322.834 kb on + strand, within Psest_2169 at 2322.834 kb on + strand, within Psest_2169 at 2322.834 kb on + strand, within Psest_2169 at 2322.835 kb on - strand, within Psest_2169 at 2322.883 kb on + strand, within Psest_2169 at 2322.999 kb on - strand, within Psest_2169
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 2,320,873 - Psest_2167 0.60 -0.3 2,320,873 - Psest_2167 0.60 -3.1 2,320,959 + Psest_2167 0.64 -1.5 2,320,960 - Psest_2167 0.65 -0.5 2,320,960 - Psest_2167 0.65 +1.6 2,320,960 - Psest_2167 0.65 +2.3 2,320,995 + Psest_2167 0.66 +2.2 2,320,995 + Psest_2167 0.66 -0.7 2,320,996 - Psest_2167 0.66 -0.3 2,321,004 + Psest_2167 0.67 -1.6 2,321,097 + Psest_2167 0.71 -0.0 2,321,183 + Psest_2167 0.75 +1.1 2,321,183 + Psest_2167 0.75 +0.8 2,321,183 + Psest_2167 0.75 +1.4 2,321,183 + Psest_2167 0.75 -1.7 2,321,183 + Psest_2167 0.75 +1.4 2,321,184 - Psest_2167 0.75 +0.9 2,321,184 - Psest_2167 0.75 +0.4 2,321,184 - Psest_2167 0.75 +0.2 2,321,184 - Psest_2167 0.75 +0.3 2,321,184 - Psest_2167 0.75 +2.1 2,321,184 - Psest_2167 0.75 -0.6 2,321,196 + Psest_2167 0.75 +1.8 2,321,454 + Psest_2167 0.87 +1.7 2,321,469 + Psest_2167 0.88 -1.4 2,321,469 + Psest_2167 0.88 -0.3 2,321,499 + Psest_2167 0.90 -0.6 2,321,500 - Psest_2167 0.90 +0.4 2,321,500 - Psest_2167 0.90 -1.1 2,321,523 + -0.5 2,322,175 - +0.1 2,322,175 - -0.2 2,322,175 - +1.3 2,322,175 - -1.7 2,322,175 - +0.9 2,322,175 - -1.0 2,322,178 + +0.8 2,322,178 + -0.5 2,322,178 + +1.0 2,322,179 - -2.1 2,322,179 - +0.6 2,322,184 + -0.9 2,322,185 - +0.4 2,322,185 - +0.6 2,322,185 - +0.0 2,322,185 - -1.3 2,322,185 - +1.6 2,322,185 - +1.7 2,322,185 - -1.1 2,322,466 + Psest_2169 0.11 +2.6 2,322,526 + Psest_2169 0.13 -0.7 2,322,526 + Psest_2169 0.13 +1.0 2,322,527 - Psest_2169 0.13 +0.4 2,322,527 - Psest_2169 0.13 +0.1 2,322,687 + Psest_2169 0.18 +2.8 2,322,834 + Psest_2169 0.24 +2.0 2,322,834 + Psest_2169 0.24 -1.0 2,322,834 + Psest_2169 0.24 -1.7 2,322,834 + Psest_2169 0.24 +0.7 2,322,835 - Psest_2169 0.24 +0.0 2,322,883 + Psest_2169 0.25 +0.4 2,322,999 - Psest_2169 0.30 +1.3
Or see this region's nucleotide sequence