Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1705 and Psest_1706 are separated by 0 nucleotides Psest_1706 and Psest_1707 are separated by 125 nucleotides Psest_1707 and Psest_1708 are separated by 8 nucleotides
Psest_1705: Psest_1705 - Electron transfer flavoprotein, beta subunit, at 1,811,581 to 1,812,330
_1705
Psest_1706: Psest_1706 - Electron transfer flavoprotein, alpha subunit, at 1,812,331 to 1,813,260
_1706
Psest_1707: Psest_1707 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,813,386 to 1,814,207
_1707
Psest_1708: Psest_1708 - hypothetical protein, at 1,814,216 to 1,814,572
_1708
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.335 kb on + strand at 1811.336 kb on - strand at 1811.336 kb on - strand at 1811.336 kb on - strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.337 kb on + strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.338 kb on - strand at 1811.339 kb on + strand at 1811.340 kb on - strand at 1811.340 kb on - strand at 1811.340 kb on - strand at 1811.340 kb on - strand at 1811.340 kb on - strand at 1811.340 kb on - strand at 1811.341 kb on + strand at 1811.342 kb on - strand at 1811.342 kb on - strand at 1811.342 kb on - strand at 1811.342 kb on - strand at 1811.363 kb on - strand at 1811.396 kb on + strand at 1811.397 kb on - strand at 1811.397 kb on - strand at 1811.397 kb on - strand at 1811.420 kb on - strand at 1811.431 kb on + strand at 1811.431 kb on + strand at 1811.431 kb on + strand at 1811.431 kb on + strand at 1811.432 kb on - strand at 1811.432 kb on - strand at 1811.432 kb on - strand at 1811.432 kb on - strand at 1811.554 kb on + strand at 1811.554 kb on + strand at 1811.554 kb on + strand at 1812.328 kb on + strand at 1812.328 kb on + strand at 1812.329 kb on - strand at 1812.432 kb on - strand, within Psest_1706 at 1812.732 kb on + strand, within Psest_1706 at 1813.294 kb on + strand at 1813.294 kb on + strand at 1813.294 kb on + strand at 1813.334 kb on + strand at 1813.334 kb on + strand at 1813.335 kb on - strand at 1813.335 kb on - strand at 1813.335 kb on - strand at 1813.608 kb on + strand, within Psest_1707 at 1813.608 kb on + strand, within Psest_1707 at 1813.608 kb on + strand, within Psest_1707 at 1813.609 kb on - strand, within Psest_1707 at 1813.609 kb on - strand, within Psest_1707 at 1813.642 kb on + strand, within Psest_1707 at 1813.664 kb on - strand, within Psest_1707 at 1813.735 kb on + strand, within Psest_1707 at 1813.735 kb on + strand, within Psest_1707 at 1813.736 kb on - strand, within Psest_1707 at 1813.776 kb on + strand, within Psest_1707 at 1813.776 kb on + strand, within Psest_1707 at 1813.935 kb on + strand, within Psest_1707 at 1813.936 kb on - strand, within Psest_1707 at 1813.936 kb on - strand, within Psest_1707 at 1814.150 kb on + strand at 1814.205 kb on + strand at 1814.206 kb on - strand at 1814.206 kb on - strand at 1814.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 1,811,335 + -1.1 1,811,335 + -0.4 1,811,335 + +0.7 1,811,335 + +0.7 1,811,335 + -1.2 1,811,335 + +0.7 1,811,335 + +0.9 1,811,335 + -0.1 1,811,335 + +0.8 1,811,336 - -0.6 1,811,336 - -2.6 1,811,336 - +0.5 1,811,337 + +0.3 1,811,337 + -4.2 1,811,337 + -0.5 1,811,337 + +1.3 1,811,337 + -0.5 1,811,337 + +0.1 1,811,337 + -1.1 1,811,337 + -0.7 1,811,337 + -0.7 1,811,337 + -0.5 1,811,337 + +1.0 1,811,337 + -0.5 1,811,337 + -1.3 1,811,337 + -2.3 1,811,338 - -3.7 1,811,338 - -1.3 1,811,338 - -0.4 1,811,338 - -0.4 1,811,338 - -2.5 1,811,338 - -1.1 1,811,338 - -1.5 1,811,338 - -0.0 1,811,338 - -1.4 1,811,338 - +1.7 1,811,338 - +0.7 1,811,338 - +0.9 1,811,338 - +0.3 1,811,339 + -2.7 1,811,340 - +0.9 1,811,340 - +1.1 1,811,340 - +0.2 1,811,340 - -1.1 1,811,340 - +0.1 1,811,340 - +0.5 1,811,341 + -0.3 1,811,342 - -0.2 1,811,342 - -0.2 1,811,342 - -2.2 1,811,342 - +1.0 1,811,363 - +0.7 1,811,396 + +1.1 1,811,397 - -0.1 1,811,397 - +0.5 1,811,397 - +0.8 1,811,420 - +0.9 1,811,431 + -2.7 1,811,431 + -0.6 1,811,431 + -0.8 1,811,431 + -1.3 1,811,432 - -0.8 1,811,432 - +0.8 1,811,432 - -1.4 1,811,432 - -0.7 1,811,554 + -0.3 1,811,554 + +0.6 1,811,554 + +0.9 1,812,328 + -1.2 1,812,328 + +0.1 1,812,329 - +1.3 1,812,432 - Psest_1706 0.11 +0.1 1,812,732 + Psest_1706 0.43 +0.9 1,813,294 + +0.1 1,813,294 + -0.7 1,813,294 + -2.3 1,813,334 + +0.8 1,813,334 + -0.3 1,813,335 - -0.3 1,813,335 - +1.0 1,813,335 - +1.2 1,813,608 + Psest_1707 0.27 -2.1 1,813,608 + Psest_1707 0.27 -0.3 1,813,608 + Psest_1707 0.27 +1.7 1,813,609 - Psest_1707 0.27 -1.4 1,813,609 - Psest_1707 0.27 -0.3 1,813,642 + Psest_1707 0.31 -2.1 1,813,664 - Psest_1707 0.34 +0.2 1,813,735 + Psest_1707 0.42 -0.3 1,813,735 + Psest_1707 0.42 -1.1 1,813,736 - Psest_1707 0.43 -1.3 1,813,776 + Psest_1707 0.47 -2.0 1,813,776 + Psest_1707 0.47 -3.9 1,813,935 + Psest_1707 0.67 +1.2 1,813,936 - Psest_1707 0.67 -2.4 1,813,936 - Psest_1707 0.67 +0.9 1,814,150 + -1.0 1,814,205 + +0.1 1,814,206 - +0.6 1,814,206 - -1.0 1,814,241 + -1.9
Or see this region's nucleotide sequence