Experiment: Def Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1692 and Psest_1693 overlap by 4 nucleotides Psest_1693 and Psest_1694 overlap by 8 nucleotides
Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811
_1692
Psest_1693: Psest_1693 - thymidylate kinase, at 1,800,808 to 1,801,440
_1693
Psest_1694: Psest_1694 - DNA polymerase III, delta' subunit, at 1,801,433 to 1,802,419
_1694
Position (kb)
1800
1801
1802 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1800.048 kb on + strand, within Psest_1692 at 1800.074 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.267 kb on + strand, within Psest_1692 at 1800.359 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.731 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml remove 1,800,048 + Psest_1692 0.29 +0.3 1,800,074 + Psest_1692 0.31 -2.9 1,800,267 + Psest_1692 0.49 -1.3 1,800,267 + Psest_1692 0.49 -2.7 1,800,267 + Psest_1692 0.49 -1.1 1,800,267 + Psest_1692 0.49 -1.7 1,800,267 + Psest_1692 0.49 -1.9 1,800,267 + Psest_1692 0.49 -1.6 1,800,267 + Psest_1692 0.49 -0.2 1,800,359 + Psest_1692 0.58 -3.4 1,800,491 + Psest_1692 0.70 -2.5 1,800,491 + Psest_1692 0.70 +0.0 1,800,491 + Psest_1692 0.70 -1.4 1,800,491 + Psest_1692 0.70 +1.6 1,800,491 + Psest_1692 0.70 -0.1 1,800,491 + Psest_1692 0.70 -2.7 1,800,491 + Psest_1692 0.70 -3.1 1,800,491 + Psest_1692 0.70 -1.7 1,800,491 + Psest_1692 0.70 -1.9 1,800,491 + Psest_1692 0.70 -1.5 1,800,491 + Psest_1692 0.70 -3.3 1,800,491 + Psest_1692 0.70 +1.5 1,800,491 + Psest_1692 0.70 -1.4 1,800,491 + Psest_1692 0.70 -1.4 1,800,491 + Psest_1692 0.70 +1.7 1,800,491 + Psest_1692 0.70 -2.5 1,800,559 + Psest_1692 0.76 -2.7 1,800,559 + Psest_1692 0.76 -1.4 1,800,559 + Psest_1692 0.76 -2.5 1,800,563 + Psest_1692 0.77 -1.0 1,800,563 + Psest_1692 0.77 +0.7 1,800,563 + Psest_1692 0.77 +0.2 1,800,563 + Psest_1692 0.77 -2.7 1,800,563 + Psest_1692 0.77 -1.5 1,800,563 + Psest_1692 0.77 -1.3 1,800,563 + Psest_1692 0.77 -1.7 1,800,656 + Psest_1692 0.85 -0.9 1,800,656 + Psest_1692 0.85 -1.2 1,800,731 + +0.4
Or see this region's nucleotide sequence