Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1679

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1678 and Psest_1679 are separated by 390 nucleotidesPsest_1679 and Psest_1680 are separated by 559 nucleotides Psest_1678: Psest_1678 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,785,074 to 1,786,093 _1678 Psest_1679: Psest_1679 - ribonuclease, Rne/Rng family, at 1,786,484 to 1,789,666 _1679 Psest_1680: Psest_1680 - pseudouridine synthase, RluA family, at 1,790,226 to 1,791,179 _1680 Position (kb) 1786 1787 1788 1789 1790Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1786.147 kb on - strandat 1786.147 kb on - strandat 1786.236 kb on + strandat 1786.236 kb on + strandat 1786.237 kb on - strandat 1786.336 kb on + strandat 1786.337 kb on - strandat 1786.337 kb on - strandat 1786.337 kb on - strandat 1786.338 kb on + strandat 1786.353 kb on - strandat 1786.383 kb on + strandat 1786.384 kb on - strandat 1786.410 kb on + strandat 1786.410 kb on + strandat 1786.410 kb on + strandat 1786.411 kb on - strandat 1786.595 kb on + strandat 1786.596 kb on - strandat 1786.707 kb on - strandat 1787.061 kb on - strand, within Psest_1679at 1787.428 kb on + strand, within Psest_1679at 1787.428 kb on + strand, within Psest_1679at 1787.429 kb on - strand, within Psest_1679at 1790.057 kb on - strandat 1790.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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1,786,147 - +0.9
1,786,147 - -2.9
1,786,236 + +0.2
1,786,236 + +0.6
1,786,237 - -3.2
1,786,336 + -1.0
1,786,337 - -1.0
1,786,337 - +0.8
1,786,337 - -2.0
1,786,338 + -1.8
1,786,353 - +0.3
1,786,383 + +1.4
1,786,384 - -1.3
1,786,410 + +0.6
1,786,410 + +1.6
1,786,410 + +1.6
1,786,411 - -2.5
1,786,595 + -0.6
1,786,596 - -0.9
1,786,707 - +2.6
1,787,061 - Psest_1679 0.18 +0.6
1,787,428 + Psest_1679 0.30 -1.9
1,787,428 + Psest_1679 0.30 -0.3
1,787,429 - Psest_1679 0.30 -2.4
1,790,057 - +0.8
1,790,188 - -0.5

Or see this region's nucleotide sequence