Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1344

Experiment: Def Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1343 and Psest_1344 are separated by 230 nucleotidesPsest_1344 and Psest_1345 are separated by 11 nucleotides Psest_1343: Psest_1343 - Serine/threonine protein phosphatase, at 1,454,143 to 1,454,919 _1343 Psest_1344: Psest_1344 - rRNA methylases, at 1,455,150 to 1,455,881 _1344 Psest_1345: Psest_1345 - Uncharacterized FAD-dependent dehydrogenases, at 1,455,893 to 1,457,530 _1345 Position (kb) 1455 1456Strain fitness (log2 ratio) -2 -1 0 1 2at 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.885 kb on + strandat 1455.034 kb on + strandat 1455.034 kb on + strandat 1455.049 kb on - strandat 1455.151 kb on + strandat 1455.166 kb on + strandat 1455.166 kb on + strandat 1455.166 kb on + strandat 1455.402 kb on + strand, within Psest_1344at 1455.402 kb on + strand, within Psest_1344at 1455.402 kb on + strand, within Psest_1344at 1455.402 kb on + strand, within Psest_1344at 1455.402 kb on + strand, within Psest_1344at 1455.402 kb on + strand, within Psest_1344at 1455.403 kb on - strand, within Psest_1344at 1455.403 kb on - strand, within Psest_1344at 1455.403 kb on - strand, within Psest_1344at 1455.552 kb on + strand, within Psest_1344at 1455.552 kb on + strand, within Psest_1344at 1455.553 kb on - strand, within Psest_1344at 1455.553 kb on - strand, within Psest_1344at 1455.553 kb on - strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.565 kb on + strand, within Psest_1344at 1455.566 kb on - strand, within Psest_1344at 1455.566 kb on - strand, within Psest_1344at 1455.566 kb on - strand, within Psest_1344at 1455.566 kb on - strand, within Psest_1344at 1455.566 kb on - strand, within Psest_1344at 1455.624 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.739 kb on + strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1455.740 kb on - strand, within Psest_1344at 1456.023 kb on + strandat 1456.189 kb on - strand, within Psest_1345at 1456.223 kb on + strand, within Psest_1345at 1456.236 kb on + strand, within Psest_1345at 1456.236 kb on + strand, within Psest_1345at 1456.237 kb on - strand, within Psest_1345at 1456.335 kb on + strand, within Psest_1345at 1456.540 kb on - strand, within Psest_1345at 1456.540 kb on - strand, within Psest_1345at 1456.567 kb on - strand, within Psest_1345at 1456.567 kb on - strand, within Psest_1345at 1456.567 kb on - strand, within Psest_1345at 1456.578 kb on + strand, within Psest_1345at 1456.578 kb on + strand, within Psest_1345at 1456.579 kb on - strand, within Psest_1345at 1456.612 kb on - strand, within Psest_1345at 1456.612 kb on - strand, within Psest_1345at 1456.612 kb on - strand, within Psest_1345at 1456.692 kb on + strand, within Psest_1345at 1456.692 kb on + strand, within Psest_1345at 1456.692 kb on + strand, within Psest_1345at 1456.692 kb on + strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.693 kb on - strand, within Psest_1345at 1456.754 kb on + strand, within Psest_1345at 1456.755 kb on - strand, within Psest_1345at 1456.755 kb on - strand, within Psest_1345at 1456.755 kb on - strand, within Psest_1345

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.02 mg/ml
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1,454,847 + +0.3
1,454,847 + +1.1
1,454,885 + +2.3
1,455,034 + -0.8
1,455,034 + +0.3
1,455,049 - -0.0
1,455,151 + -1.9
1,455,166 + -1.0
1,455,166 + -1.9
1,455,166 + +0.2
1,455,402 + Psest_1344 0.34 +1.0
1,455,402 + Psest_1344 0.34 +1.7
1,455,402 + Psest_1344 0.34 +1.8
1,455,402 + Psest_1344 0.34 +1.3
1,455,402 + Psest_1344 0.34 -0.5
1,455,402 + Psest_1344 0.34 +0.8
1,455,403 - Psest_1344 0.35 +0.7
1,455,403 - Psest_1344 0.35 -2.1
1,455,403 - Psest_1344 0.35 +0.4
1,455,552 + Psest_1344 0.55 +0.6
1,455,552 + Psest_1344 0.55 +0.1
1,455,553 - Psest_1344 0.55 +0.3
1,455,553 - Psest_1344 0.55 +0.4
1,455,553 - Psest_1344 0.55 +1.2
1,455,565 + Psest_1344 0.57 -2.6
1,455,565 + Psest_1344 0.57 +1.1
1,455,565 + Psest_1344 0.57 -2.6
1,455,565 + Psest_1344 0.57 -1.5
1,455,565 + Psest_1344 0.57 -1.5
1,455,565 + Psest_1344 0.57 +2.5
1,455,566 - Psest_1344 0.57 +0.8
1,455,566 - Psest_1344 0.57 -0.8
1,455,566 - Psest_1344 0.57 +0.2
1,455,566 - Psest_1344 0.57 +0.7
1,455,566 - Psest_1344 0.57 +0.2
1,455,624 + Psest_1344 0.65 -2.2
1,455,739 + Psest_1344 0.80 +0.1
1,455,739 + Psest_1344 0.80 -1.8
1,455,739 + Psest_1344 0.80 -0.2
1,455,739 + Psest_1344 0.80 -1.3
1,455,739 + Psest_1344 0.80 -0.7
1,455,739 + Psest_1344 0.80 +0.9
1,455,739 + Psest_1344 0.80 +0.5
1,455,739 + Psest_1344 0.80 -2.5
1,455,740 - Psest_1344 0.81 +2.5
1,455,740 - Psest_1344 0.81 +0.1
1,455,740 - Psest_1344 0.81 +1.0
1,455,740 - Psest_1344 0.81 -0.8
1,455,740 - Psest_1344 0.81 -1.3
1,455,740 - Psest_1344 0.81 +0.4
1,455,740 - Psest_1344 0.81 +1.2
1,456,023 + +1.1
1,456,189 - Psest_1345 0.18 -1.0
1,456,223 + Psest_1345 0.20 +0.4
1,456,236 + Psest_1345 0.21 +1.2
1,456,236 + Psest_1345 0.21 +2.7
1,456,237 - Psest_1345 0.21 -1.5
1,456,335 + Psest_1345 0.27 -0.6
1,456,540 - Psest_1345 0.39 -0.1
1,456,540 - Psest_1345 0.39 -0.5
1,456,567 - Psest_1345 0.41 -1.6
1,456,567 - Psest_1345 0.41 -0.1
1,456,567 - Psest_1345 0.41 +1.3
1,456,578 + Psest_1345 0.42 +0.0
1,456,578 + Psest_1345 0.42 +0.5
1,456,579 - Psest_1345 0.42 -2.6
1,456,612 - Psest_1345 0.44 -1.0
1,456,612 - Psest_1345 0.44 +0.6
1,456,612 - Psest_1345 0.44 +0.5
1,456,692 + Psest_1345 0.49 +0.6
1,456,692 + Psest_1345 0.49 +1.5
1,456,692 + Psest_1345 0.49 -0.3
1,456,692 + Psest_1345 0.49 +0.4
1,456,693 - Psest_1345 0.49 +0.6
1,456,693 - Psest_1345 0.49 -0.0
1,456,693 - Psest_1345 0.49 -0.8
1,456,693 - Psest_1345 0.49 -1.5
1,456,693 - Psest_1345 0.49 -0.4
1,456,693 - Psest_1345 0.49 +1.2
1,456,693 - Psest_1345 0.49 +1.4
1,456,754 + Psest_1345 0.53 -0.8
1,456,755 - Psest_1345 0.53 +0.3
1,456,755 - Psest_1345 0.53 -1.0
1,456,755 - Psest_1345 0.53 +0.8

Or see this region's nucleotide sequence