Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0902

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0902 and Psest_0903 are separated by 138 nucleotides Psest_0902: Psest_0902 - Predicted transcriptional regulators, at 980,249 to 980,554 _0902 Psest_0903: Psest_0903 - luciferase-type oxidoreductase, BA3436 family, at 980,693 to 981,676 _0903 Position (kb) 980 981Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.515 kb on + strandat 979.659 kb on + strandat 979.659 kb on + strandat 979.659 kb on + strandat 979.659 kb on + strandat 979.669 kb on - strandat 979.743 kb on + strandat 979.744 kb on - strandat 980.004 kb on + strandat 980.103 kb on + strandat 980.104 kb on - strandat 980.104 kb on - strandat 980.104 kb on - strandat 980.104 kb on - strandat 980.136 kb on + strandat 980.137 kb on - strandat 980.137 kb on - strandat 980.178 kb on + strandat 980.232 kb on + strandat 980.232 kb on + strandat 980.287 kb on + strand, within Psest_0902at 980.307 kb on + strand, within Psest_0902at 980.307 kb on + strand, within Psest_0902at 980.308 kb on - strand, within Psest_0902at 980.308 kb on - strand, within Psest_0902at 980.308 kb on - strand, within Psest_0902at 980.310 kb on + strand, within Psest_0902at 980.311 kb on - strand, within Psest_0902at 980.311 kb on - strand, within Psest_0902at 980.311 kb on - strand, within Psest_0902at 980.370 kb on + strand, within Psest_0902at 980.371 kb on - strand, within Psest_0902at 980.416 kb on + strand, within Psest_0902at 980.417 kb on - strand, within Psest_0902at 980.548 kb on + strandat 980.548 kb on + strandat 980.549 kb on - strandat 980.549 kb on - strandat 980.549 kb on - strandat 980.586 kb on + strandat 980.587 kb on - strandat 980.591 kb on - strandat 980.683 kb on + strandat 980.683 kb on + strandat 980.684 kb on - strandat 980.684 kb on - strandat 980.684 kb on - strandat 980.699 kb on - strandat 980.737 kb on + strandat 980.737 kb on + strandat 980.737 kb on + strandat 980.738 kb on - strandat 980.738 kb on - strandat 980.738 kb on - strandat 980.779 kb on + strandat 980.779 kb on + strandat 980.779 kb on + strandat 980.779 kb on + strandat 980.779 kb on + strandat 980.782 kb on + strandat 980.782 kb on + strandat 980.782 kb on + strandat 980.782 kb on + strandat 980.783 kb on - strandat 980.783 kb on - strandat 980.784 kb on + strandat 980.784 kb on + strandat 980.784 kb on + strandat 980.785 kb on - strandat 980.785 kb on - strandat 980.810 kb on + strand, within Psest_0903at 980.810 kb on + strand, within Psest_0903at 980.810 kb on + strand, within Psest_0903at 980.810 kb on + strand, within Psest_0903at 980.854 kb on + strand, within Psest_0903at 980.854 kb on + strand, within Psest_0903at 980.855 kb on - strand, within Psest_0903at 980.873 kb on + strand, within Psest_0903at 980.922 kb on + strand, within Psest_0903at 980.922 kb on + strand, within Psest_0903at 980.922 kb on + strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.923 kb on - strand, within Psest_0903at 980.946 kb on + strand, within Psest_0903at 980.946 kb on + strand, within Psest_0903at 980.946 kb on + strand, within Psest_0903at 980.947 kb on - strand, within Psest_0903at 980.947 kb on - strand, within Psest_0903at 980.947 kb on - strand, within Psest_0903at 980.950 kb on + strand, within Psest_0903at 980.951 kb on - strand, within Psest_0903at 980.951 kb on - strand, within Psest_0903at 980.951 kb on - strand, within Psest_0903at 981.024 kb on + strand, within Psest_0903at 981.024 kb on + strand, within Psest_0903at 981.098 kb on + strand, within Psest_0903at 981.099 kb on - strand, within Psest_0903at 981.099 kb on - strand, within Psest_0903at 981.112 kb on + strand, within Psest_0903at 981.112 kb on + strand, within Psest_0903at 981.113 kb on - strand, within Psest_0903at 981.140 kb on + strand, within Psest_0903at 981.140 kb on + strand, within Psest_0903at 981.141 kb on - strand, within Psest_0903at 981.364 kb on + strand, within Psest_0903at 981.364 kb on + strand, within Psest_0903at 981.365 kb on - strand, within Psest_0903at 981.387 kb on - strand, within Psest_0903at 981.404 kb on - strand, within Psest_0903at 981.404 kb on - strand, within Psest_0903at 981.417 kb on + strand, within Psest_0903at 981.418 kb on - strand, within Psest_0903at 981.426 kb on + strand, within Psest_0903at 981.426 kb on + strand, within Psest_0903at 981.426 kb on + strand, within Psest_0903at 981.427 kb on - strand, within Psest_0903at 981.427 kb on - strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.548 kb on + strand, within Psest_0903at 981.549 kb on - strand, within Psest_0903

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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979,515 + -0.3
979,659 + -0.1
979,659 + +0.3
979,659 + -0.5
979,659 + +0.0
979,669 - -1.3
979,743 + +0.2
979,744 - +0.1
980,004 + -1.8
980,103 + -1.7
980,104 - -1.9
980,104 - +0.3
980,104 - -0.8
980,104 - +0.7
980,136 + -0.7
980,137 - +0.3
980,137 - -2.2
980,178 + -1.9
980,232 + +0.3
980,232 + -1.3
980,287 + Psest_0902 0.12 +0.2
980,307 + Psest_0902 0.19 +1.0
980,307 + Psest_0902 0.19 -1.9
980,308 - Psest_0902 0.19 -1.3
980,308 - Psest_0902 0.19 +0.3
980,308 - Psest_0902 0.19 -1.9
980,310 + Psest_0902 0.20 +0.2
980,311 - Psest_0902 0.20 -1.3
980,311 - Psest_0902 0.20 -0.8
980,311 - Psest_0902 0.20 -2.6
980,370 + Psest_0902 0.40 +1.0
980,371 - Psest_0902 0.40 -1.7
980,416 + Psest_0902 0.55 -1.1
980,417 - Psest_0902 0.55 -1.5
980,548 + -0.4
980,548 + +0.5
980,549 - -1.7
980,549 - -1.8
980,549 - +0.8
980,586 + +1.4
980,587 - -0.4
980,591 - +0.1
980,683 + -0.7
980,683 + +0.0
980,684 - +0.2
980,684 - -1.4
980,684 - +1.5
980,699 - +0.4
980,737 + -1.0
980,737 + +0.4
980,737 + -2.7
980,738 - -1.3
980,738 - -1.5
980,738 - +0.1
980,779 + +0.1
980,779 + -1.0
980,779 + +1.4
980,779 + +0.0
980,779 + -0.7
980,782 + -1.4
980,782 + -0.7
980,782 + -0.7
980,782 + +0.9
980,783 - -0.5
980,783 - -0.6
980,784 + -0.9
980,784 + -1.0
980,784 + -0.2
980,785 - -0.9
980,785 - -1.9
980,810 + Psest_0903 0.12 -0.5
980,810 + Psest_0903 0.12 -0.4
980,810 + Psest_0903 0.12 -0.6
980,810 + Psest_0903 0.12 -0.6
980,854 + Psest_0903 0.16 +0.3
980,854 + Psest_0903 0.16 -0.4
980,855 - Psest_0903 0.16 -1.3
980,873 + Psest_0903 0.18 +0.9
980,922 + Psest_0903 0.23 -1.7
980,922 + Psest_0903 0.23 -2.0
980,922 + Psest_0903 0.23 -0.5
980,923 - Psest_0903 0.23 -1.2
980,923 - Psest_0903 0.23 -1.5
980,923 - Psest_0903 0.23 -0.1
980,923 - Psest_0903 0.23 -0.8
980,923 - Psest_0903 0.23 -0.4
980,923 - Psest_0903 0.23 -0.8
980,923 - Psest_0903 0.23 +0.1
980,946 + Psest_0903 0.26 -1.2
980,946 + Psest_0903 0.26 -0.8
980,946 + Psest_0903 0.26 -0.5
980,947 - Psest_0903 0.26 +0.1
980,947 - Psest_0903 0.26 -0.7
980,947 - Psest_0903 0.26 -1.1
980,950 + Psest_0903 0.26 +0.0
980,951 - Psest_0903 0.26 +0.1
980,951 - Psest_0903 0.26 -0.8
980,951 - Psest_0903 0.26 -1.0
981,024 + Psest_0903 0.34 -3.0
981,024 + Psest_0903 0.34 +0.1
981,098 + Psest_0903 0.41 +0.5
981,099 - Psest_0903 0.41 -1.5
981,099 - Psest_0903 0.41 -1.1
981,112 + Psest_0903 0.43 +1.1
981,112 + Psest_0903 0.43 +0.8
981,113 - Psest_0903 0.43 -2.6
981,140 + Psest_0903 0.45 -0.5
981,140 + Psest_0903 0.45 +0.2
981,141 - Psest_0903 0.46 -0.4
981,364 + Psest_0903 0.68 +1.6
981,364 + Psest_0903 0.68 -0.3
981,365 - Psest_0903 0.68 -1.0
981,387 - Psest_0903 0.71 -1.4
981,404 - Psest_0903 0.72 -1.8
981,404 - Psest_0903 0.72 -1.1
981,417 + Psest_0903 0.74 -1.3
981,418 - Psest_0903 0.74 -0.1
981,426 + Psest_0903 0.74 +0.1
981,426 + Psest_0903 0.74 +0.1
981,426 + Psest_0903 0.74 +0.4
981,427 - Psest_0903 0.75 -0.3
981,427 - Psest_0903 0.75 -0.9
981,548 + Psest_0903 0.87 +1.3
981,548 + Psest_0903 0.87 +1.6
981,548 + Psest_0903 0.87 +0.4
981,548 + Psest_0903 0.87 +1.4
981,548 + Psest_0903 0.87 +1.4
981,548 + Psest_0903 0.87 +2.7
981,548 + Psest_0903 0.87 +1.0
981,548 + Psest_0903 0.87 +1.3
981,548 + Psest_0903 0.87 +0.7
981,548 + Psest_0903 0.87 +1.4
981,548 + Psest_0903 0.87 +1.5
981,549 - Psest_0903 0.87 -0.0

Or see this region's nucleotide sequence